Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZDN entry

There are 30 chains in PDB entry 8ZDN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ALA 300
B
 THR 2ALA 300
C
 THR 2ALA 300
D
 THR 2ALA 300
E
 THR 2ALA 300
F
 THR 2ALA 300
G
 THR 2ALA 300
H
 THR 2ALA 300
I
 THR 2ALA 300
J
 THR 2ALA 300
K
 THR 2ALA 300
L
 THR 2ALA 300
M
 THR 2ALA 300
N
 THR 2ALA 300
O
 THR 2ALA 300
P
 THR 2ALA 300
Q
 THR 2ALA 300
R
 THR 2ALA 300
S
 THR 2ALA 300
T
 THR 2ALA 300
U
 THR 2ALA 300
V
 THR 2ALA 300
W
 THR 2ALA 300
X
 THR 2ALA 300
a
 THR 2ALA 300
b
 THR 2ALA 300
c
 THR 2ALA 300
d
 THR 2ALA 300
e
 THR 2ALA 300
f
 THR 2ALA 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are159 helices in PDB entry 8ZDN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
11 15Right-handed 310
Helix 3
AA3
A
101 110Right-handed alpha
Helix 4
AA4
A
201 209Right-handed alpha
Helix 5
AA5
A
234 236Right-handed 310
Helix 6
AA6
B
3 9Right-handed alpha
Helix 7
AA7
B
11 15Right-handed 310
Helix 8
AA8
B
101 110Right-handed alpha
Helix 9
AA9
B
201 206Right-handed alpha
Helix 10
AB1
B
207 212Right-handed alpha
Helix 11
AB2
B
234 236Right-handed 310
Helix 12
AB3
C
3 9Right-handed alpha
Helix 13
AB4
C
11 15Right-handed 310
Helix 14
AB5
C
101 110Right-handed alpha
Helix 15
AB6
C
201 206Right-handed alpha
Helix 16
AB7
C
207 212Right-handed alpha
Helix 17
AB8
C
234 236Right-handed 310
Helix 18
AB9
D
3 9Right-handed alpha
Helix 19
AC1
D
11 15Right-handed 310
Helix 20
AC2
D
101 110Right-handed alpha
Helix 21
AC3
D
201 209Right-handed alpha
Helix 22
AC4
D
234 236Right-handed 310
Helix 23
AC5
E
3 9Right-handed alpha
Helix 24
AC6
E
11 15Right-handed 310
Helix 25
AC7
E
101 110Right-handed alpha
Helix 26
AC8
E
201 206Right-handed alpha
Helix 27
AC9
E
207 212Right-handed alpha
Helix 28
AD1
E
234 236Right-handed 310
Helix 29
AD2
F
3 9Right-handed alpha
Helix 30
AD3
F
11 15Right-handed 310
Helix 31
AD4
F
101 110Right-handed alpha
Helix 32
AD5
F
201 206Right-handed alpha
Helix 33
AD6
F
207 212Right-handed alpha
Helix 34
AD7
F
234 236Right-handed 310
Helix 35
AD8
G
3 9Right-handed alpha
Helix 36
AD9
G
11 15Right-handed 310
Helix 37
AE1
G
101 110Right-handed alpha
Helix 38
AE2
G
201 212Right-handed alpha
Helix 39
AE3
G
234 236Right-handed 310
Helix 40
AE4
G
251 255Right-handed 310
Helix 41
AE5
H
3 9Right-handed alpha
Helix 42
AE6
H
11 15Right-handed 310
Helix 43
AE7
H
101 110Right-handed alpha
Helix 44
AE8
H
201 212Right-handed alpha
Helix 45
AE9
H
234 236Right-handed 310
Helix 46
AF1
I
3 9Right-handed alpha
Helix 47
AF2
I
11 15Right-handed 310
Helix 48
AF3
I
101 110Right-handed alpha
Helix 49
AF4
I
201 212Right-handed alpha
Helix 50
AF5
I
234 236Right-handed 310
Helix 51
AF6
J
3 9Right-handed alpha
Helix 52
AF7
J
11 15Right-handed 310
Helix 53
AF8
J
101 110Right-handed alpha
Helix 54
AF9
J
201 212Right-handed alpha
Helix 55
AG1
J
234 236Right-handed 310
Helix 56
AG2
K
3 9Right-handed alpha
Helix 57
AG3
K
11 15Right-handed 310
Helix 58
AG4
K
101 110Right-handed alpha
Helix 59
AG5
K
201 212Right-handed alpha
Helix 60
AG6
K
234 236Right-handed 310
Helix 61
AG7
L
3 9Right-handed alpha
Helix 62
AG8
L
11 15Right-handed 310
Helix 63
AG9
L
101 110Right-handed alpha
Helix 64
AH1
L
201 212Right-handed alpha
Helix 65
AH2
L
234 236Right-handed 310
Helix 66
AH3
M
3 9Right-handed alpha
Helix 67
AH4
M
11 15Right-handed 310
Helix 68
AH5
M
101 110Right-handed alpha
Helix 69
AH6
M
201 208Right-handed alpha
Helix 70
AH7
N
3 9Right-handed alpha
Helix 71
AH8
N
11 15Right-handed 310
Helix 72
AH9
N
101 110Right-handed alpha
Helix 73
AI1
N
201 208Right-handed alpha
Helix 74
AI2
O
3 9Right-handed alpha
Helix 75
AI3
O
11 15Right-handed 310
Helix 76
AI4
O
101 110Right-handed alpha
Helix 77
AI5
O
201 212Right-handed alpha
Helix 78
AI6
P
3 9Right-handed alpha
Helix 79
AI7
P
11 15Right-handed 310
Helix 80
AI8
P
101 110Right-handed alpha
Helix 81
AI9
P
201 208Right-handed alpha
Helix 82
AJ1
Q
3 9Right-handed alpha
Helix 83
AJ2
Q
11 15Right-handed 310
Helix 84
AJ3
Q
101 110Right-handed alpha
Helix 85
AJ4
Q
201 208Right-handed alpha
Helix 86
AJ5
R
3 9Right-handed alpha
Helix 87
AJ6
R
11 15Right-handed 310
Helix 88
AJ7
R
101 110Right-handed alpha
Helix 89
AJ8
R
201 212Right-handed alpha
Helix 90
AJ9
S
3 9Right-handed alpha
Helix 91
AK1
S
101 110Right-handed alpha
Helix 92
AK2
S
201 206Right-handed alpha
Helix 93
AK3
S
207 212Right-handed alpha
Helix 94
AK4
S
234 236Right-handed 310
Helix 95
AK5
T
3 9Right-handed alpha
Helix 96
AK6
T
101 110Right-handed alpha
Helix 97
AK7
T
201 206Right-handed alpha
Helix 98
AK8
T
207 212Right-handed alpha
Helix 99
AK9
T
234 236Right-handed 310
Helix 100
AL1
U
3 9Right-handed alpha
Helix 101
AL2
U
11 15Right-handed 310
Helix 102
AL3
U
101 110Right-handed alpha
Helix 103
AL4
U
201 206Right-handed alpha
Helix 104
AL5
U
207 212Right-handed alpha
Helix 105
AL6
U
234 236Right-handed 310
Helix 106
AL7
V
3 9Right-handed alpha
Helix 107
AL8
V
101 110Right-handed alpha
Helix 108
AL9
V
201 206Right-handed alpha
Helix 109
AM1
V
207 212Right-handed alpha
Helix 110
AM2
V
234 236Right-handed 310
Helix 111
AM3
W
3 9Right-handed alpha
Helix 112
AM4
W
11 15Right-handed 310
Helix 113
AM5
W
101 110Right-handed alpha
Helix 114
AM6
W
201 206Right-handed alpha
Helix 115
AM7
W
207 212Right-handed alpha
Helix 116
AM8
W
234 236Right-handed 310
Helix 117
AM9
X
3 9Right-handed alpha
Helix 118
AN1
X
11 15Right-handed 310
Helix 119
AN2
X
101 110Right-handed alpha
Helix 120
AN3
X
201 206Right-handed alpha
Helix 121
AN4
X
207 212Right-handed alpha
Helix 122
AN5
X
234 236Right-handed 310
Helix 123
AN6
a
3 9Right-handed alpha
Helix 124
AN7
a
11 15Right-handed 310
Helix 125
AN8
a
101 110Right-handed alpha
Helix 126
AN9
a
201 206Right-handed alpha
Helix 127
AO1
a
207 212Right-handed alpha
Helix 128
AO2
a
234 236Right-handed 310
Helix 129
AO3
b
3 9Right-handed alpha
Helix 130
AO4
b
11 15Right-handed 310
Helix 131
AO5
b
101 110Right-handed alpha
Helix 132
AO6
b
112 116Right-handed 310
Helix 133
AO7
b
201 206Right-handed alpha
Helix 134
AO8
b
207 212Right-handed alpha
Helix 135
AO9
b
234 236Right-handed 310
Helix 136
AP1
c
3 9Right-handed alpha
Helix 137
AP2
c
11 15Right-handed 310
Helix 138
AP3
c
101 110Right-handed alpha
Helix 139
AP4
c
201 206Right-handed alpha
Helix 140
AP5
c
207 212Right-handed alpha
Helix 141
AP6
c
234 236Right-handed 310
Helix 142
AP7
d
3 9Right-handed alpha
Helix 143
AP8
d
11 15Right-handed 310
Helix 144
AP9
d
101 110Right-handed alpha
Helix 145
AQ1
d
201 206Right-handed alpha
Helix 146
AQ2
d
207 212Right-handed alpha
Helix 147
AQ3
d
234 236Right-handed 310
Helix 148
AQ4
e
3 9Right-handed alpha
Helix 149
AQ5
e
11 15Right-handed 310
Helix 150
AQ6
e
101 110Right-handed alpha
Helix 151
AQ7
e
201 206Right-handed alpha
Helix 152
AQ8
e
207 212Right-handed alpha
Helix 153
AQ9
e
234 236Right-handed 310
Helix 154
AR1
f
3 9Right-handed alpha
Helix 155
AR2
f
11 15Right-handed 310
Helix 156
AR3
f
101 110Right-handed alpha
Helix 157
AR4
f
201 206Right-handed alpha
Helix 158
AR5
f
207 212Right-handed alpha
Helix 159
AR6
f
234 236Right-handed 310
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