Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZDR entry

There are 4 chains in PDB entry 8ZDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 G 0 U 149
B
 C -9 A 22
C
 LEU 7ALA 743
D
 C -21 G -11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8ZDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
39 74Right-handed alpha
Helix 2
AA2
C
80 90Right-handed alpha
Helix 3
AA3
C
136 151Right-handed alpha
Helix 4
AA4
C
154 167Right-handed alpha
Helix 5
AA5
C
193 196Right-handed 310
Helix 6
AA6
C
197 207Right-handed alpha
Helix 7
AA7
C
212 224Right-handed alpha
Helix 8
AA8
C
229 239Right-handed alpha
Helix 9
AA9
C
242 255Right-handed alpha
Helix 10
AB1
C
264 275Right-handed 310
Helix 11
AB2
C
285 302Right-handed alpha
Helix 12
AB3
C
451 460Right-handed alpha
Helix 13
AB4
C
496 501Right-handed alpha
Helix 14
AB5
C
573 575Right-handed 310
Helix 15
AB6
C
579 583Right-handed 310
Helix 16
AB7
C
585 600Right-handed alpha
Helix 17
AB8
C
608 616Right-handed alpha
Helix 18
AB9
C
636 638Right-handed 310
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There are 5 sheets in PDB entry 8ZDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
9 12first strand
Strand 2
C
15 18anti-parallel
Strand 3
C
32 35anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
560 562first strand
Strand 2
C
565 571anti-parallel
Strand 3
C
627 631anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
640 643first strand
Strand 2
C
646 649anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
672 673first strand
Strand 2
C
654 657anti-parallel
Strand 3
C
696 697anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
721 722first strand
Strand 2
C
735 736anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il