Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZDX entry

There are 2 chains in PDB entry 8ZDX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 38	PRO 766
C	ASP 38	PHE 524

There are 50 helices in PDB entry 8ZDX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	50	Right-handed alpha
Helix 2	AA2	A	92	96	Right-handed 310
Helix 3	AA3	A	200	207	Right-handed alpha
Helix 4	AA4	A	341	344	Right-handed 310
Helix 5	AA5	A	421	425	Right-handed 310
Helix 6	AA6	A	463	465	Right-handed 310
Helix 7	AA7	A	497	505	Right-handed alpha
Helix 8	AA8	A	562	570	Right-handed alpha
Helix 9	AA9	A	586	592	Right-handed alpha
Helix 10	AB1	A	593	595	Right-handed 310
Helix 11	AB2	A	600	615	Right-handed alpha
Helix 12	AB3	A	630	641	Right-handed alpha
Helix 13	AB4	A	658	662	Right-handed 310
Helix 14	AB5	A	663	672	Right-handed alpha
Helix 15	AB6	A	679	685	Right-handed alpha
Helix 16	AB7	A	686	687	Right-handed 310
Helix 17	AB8	A	688	698	Right-handed 310
Helix 18	AB9	A	712	727	Right-handed alpha
Helix 19	AC1	A	744	763	Right-handed alpha
Helix 20	AC2	C	44	50	Right-handed alpha
Helix 21	AC3	C	200	207	Right-handed alpha
Helix 22	AC4	C	290	295	Right-handed alpha
Helix 23	AC5	C	341	344	Right-handed 310
Helix 24	AC6	C	421	425	Right-handed 310
Helix 25	AC7	C	463	465	Right-handed 310
Helix 26	AC8	C	497	505	Right-handed alpha
Helix 27	AC9	C	562	570	Right-handed alpha
Helix 28	AD1	C	587	592	Right-handed alpha
Helix 29	AD2	C	593	595	Right-handed 310
Helix 30	AD3	C	600	616	Right-handed alpha
Helix 31	AD4	C	630	641	Right-handed alpha
Helix 32	AD5	C	663	671	Right-handed alpha
Helix 33	AD6	C	679	686	Right-handed alpha
Helix 34	AD7	C	688	698	Right-handed 310
Helix 35	AD8	C	712	725	Right-handed alpha
Helix 36	AD9	C	744	763	Right-handed alpha
Helix 37	AE1	D	393	397	Right-handed 310
Helix 38	AE2	D	403	407	Right-handed 310
Helix 39	AE3	D	418	425	Right-handed alpha
Helix 40	AE4	D	439	443	Right-handed 310
Helix 41	AE5	D	457	465	Right-handed 310
Helix 42	AE6	D	470	476	Right-handed alpha
Helix 43	AE7	D	515	519	Right-handed 310
Helix 44	AE8	D	534	538	Right-handed 310
Helix 45	AE9	B	393	398	Right-handed 310
Helix 46	AF1	B	418	425	Right-handed alpha
Helix 47	AF2	B	439	443	Right-handed 310
Helix 48	AF3	B	457	464	Right-handed 310
Helix 49	AF4	B	470	476	Right-handed alpha
Helix 50	AF5	B	532	537	Right-handed 310

There are 29 sheets in PDB entry 8ZDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	67	72	anti-parallel
Strand 3	A	75	80	anti-parallel
Strand 4	A	86	90	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	107	first strand
Strand 2	A	113	122	anti-parallel
Strand 3	A	128	136	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	157	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	171	175	anti-parallel
Strand 4	A	183	184	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	214	216	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	222	229	anti-parallel
Strand 3	A	265	272	anti-parallel
Strand 4	A	285	286	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	240	first strand
Strand 2	A	250	255	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	330	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	305	first strand
Strand 2	A	310	317	anti-parallel
Strand 3	A	322	330	anti-parallel
Strand 4	A	345	348	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	370	376	anti-parallel
Strand 3	A	382	388	anti-parallel
Strand 4	A	391	396	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	410	first strand
Strand 2	A	414	419	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	443	444	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	461	first strand
Strand 2	A	467	475	anti-parallel
Strand 3	A	479	484	anti-parallel
Strand 4	A	492	495	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	519	first strand
Strand 2	A	522	530	anti-parallel
Strand 3	A	574	579	anti-parallel
Strand 4	A	542	545	parallel
Strand 5	A	624	629	parallel
Strand 6	A	649	653	parallel
Strand 7	A	699	705	parallel
Strand 8	A	731	735	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	507	508	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	67	72	anti-parallel
Strand 3	C	75	80	anti-parallel
Strand 4	C	86	90	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	107	first strand
Strand 2	C	113	122	anti-parallel
Strand 3	C	128	136	anti-parallel
Strand 4	C	141	143	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	157	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	171	175	anti-parallel
Strand 4	C	183	184	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	222	229	anti-parallel
Strand 3	C	214	216	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	222	229	anti-parallel
Strand 3	C	265	272	anti-parallel
Strand 4	C	284	286	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	240	first strand
Strand 2	C	250	255	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	305	first strand
Strand 2	C	310	317	anti-parallel
Strand 3	C	322	330	anti-parallel
Strand 4	C	337	339	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	305	first strand
Strand 2	C	310	317	anti-parallel
Strand 3	C	322	330	anti-parallel
Strand 4	C	345	348	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	363	364	first strand
Strand 2	C	370	376	anti-parallel
Strand 3	C	382	388	anti-parallel
Strand 4	C	391	396	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	410	first strand
Strand 2	C	414	419	anti-parallel
Strand 3	C	430	435	anti-parallel
Strand 4	C	442	444	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	461	first strand
Strand 2	C	467	472	anti-parallel
Strand 3	C	479	484	anti-parallel
Strand 4	C	489	495	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	518	first strand
Strand 2	C	523	530	anti-parallel
Strand 3	C	574	578	anti-parallel
Strand 4	C	540	546	parallel
Strand 5	C	619	629	parallel
Strand 6	C	649	653	parallel
Strand 7	C	699	705	parallel
Strand 8	C	731	735	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	408	412	first strand
Strand 2	D	448	455	anti-parallel
Strand 3	D	575	584	anti-parallel
Strand 4	D	485	492	anti-parallel
Strand 5	D	427	434	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	523	first strand
Strand 2	D	504	514	anti-parallel
Strand 3	D	561	569	anti-parallel
Strand 4	D	547	552	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	408	412	first strand
Strand 2	B	449	455	anti-parallel
Strand 3	B	576	583	anti-parallel
Strand 4	B	485	491	anti-parallel
Strand 5	B	427	434	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	523	first strand
Strand 2	B	504	514	anti-parallel
Strand 3	B	561	569	anti-parallel
Strand 4	B	548	552	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZDX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZDX