Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZEF entry

There are 3 chains in PDB entry 8ZEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 894
B
 T 1 T 4
C
 T 1 T 7
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 8ZEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 59Right-handed alpha
Helix 2
AA2
A
61 66Right-handed alpha
Helix 3
AA3
A
70 83Right-handed alpha
Helix 4
AA4
A
91 105Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
133 140Right-handed alpha
Helix 7
AA7
A
150 169Right-handed alpha
Helix 8
AA8
A
172 185Right-handed alpha
Helix 9
AA9
A
191 201Right-handed alpha
Helix 10
AB1
A
235 247Right-handed alpha
Helix 11
AB2
A
252 268Right-handed alpha
Helix 12
AB3
A
280 298Right-handed alpha
Helix 13
AB4
A
307 317Right-handed alpha
Helix 14
AB5
A
317 323Right-handed alpha
Helix 15
AB6
A
346 352Right-handed alpha
Helix 16
AB7
A
358 371Right-handed alpha
Helix 17
AB8
A
385 399Right-handed alpha
Helix 18
AB9
A
409 414Right-handed alpha
Helix 19
AC1
A
426 430Right-handed alpha
Helix 20
AC2
A
452 458Right-handed alpha
Helix 21
AC3
A
467 476Right-handed alpha
Helix 22
AC4
A
483 498Right-handed alpha
Helix 23
AC5
A
507 535Right-handed alpha
Helix 24
AC6
A
554 574Right-handed alpha
Helix 25
AC7
A
580 607Right-handed alpha
Helix 26
AC8
A
619 622Right-handed 310
Helix 27
AC9
A
631 640Right-handed alpha
Helix 28
AD1
A
660 665Right-handed alpha
Helix 29
AD2
A
667 671Right-handed 310
Helix 30
AD3
A
684 687Right-handed alpha
Helix 31
AD4
A
700 703Right-handed 310
Helix 32
AD5
A
704 722Right-handed alpha
Helix 33
AD6
A
732 746Right-handed alpha
Helix 34
AD7
A
747 750Right-handed 310
Helix 35
AD8
A
761 771Right-handed alpha
Helix 36
AD9
A
809 816Right-handed alpha
Helix 37
AE1
A
817 819Right-handed 310
Helix 38
AE2
A
826 843Right-handed alpha
Helix 39
AE3
A
857 862Right-handed alpha
Helix 40
AE4
A
864 870Right-handed alpha
Helix 41
AE5
A
871 873Right-handed 310
Helix 42
AE6
A
881 894Right-handed alpha
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There are 4 sheets in PDB entry 8ZEF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 43first strand
Strand 2
A
23 32anti-parallel
Strand 3
A
6 13anti-parallel
Strand 4
A
86 89parallel
Strand 5
A
114 117parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
421 425parallel
Strand 3
A
301 305parallel
Strand 4
A
444 448parallel
Strand 5
A
646 651parallel
Strand 6
A
273 275parallel
Strand 7
A
676 677parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 466first strand
Strand 2
A
624 628anti-parallel
Strand 3
A
610 613anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 755first strand
Strand 2
A
776 781parallel
Strand 3
A
728 730parallel
Strand 4
A
796 799parallel
Strand 5
A
850 854parallel
Strand 6
A
688 693parallel
Strand 7
A
879 880parallel
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