Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZEK entry

There are 3 chains in PDB entry 8ZEK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ILE 1205
B
 ALA 2GLU 117
C
 ALA 2GLU 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8ZEK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 28Right-handed alpha
Helix 2
AA2
A
61 76Right-handed alpha
Helix 3
AA3
A
76 101Right-handed alpha
Helix 4
AA4
A
120 125Right-handed alpha
Helix 5
AA5
A
125 134Right-handed alpha
Helix 6
AA6
A
137 147Right-handed alpha
Helix 7
AA7
A
151 170Right-handed alpha
Helix 8
AA8
A
179 184Right-handed alpha
Helix 9
AA9
A
187 191Right-handed 310
Helix 10
AB1
A
194 203Right-handed alpha
Helix 11
AB2
A
204 209Right-handed alpha
Helix 12
AB3
A
210 221Right-handed alpha
Helix 13
AB4
A
223 230Right-handed alpha
Helix 14
AB5
A
238 243Right-handed alpha
Helix 15
AB6
A
248 268Right-handed alpha
Helix 16
AB7
A
272 277Right-handed alpha
Helix 17
AB8
A
287 298Right-handed alpha
Helix 18
AB9
A
317 335Right-handed alpha
Helix 19
AC1
A
339 348Right-handed alpha
Helix 20
AC2
A
356 375Right-handed alpha
Helix 21
AC3
A
377 382Right-handed alpha
Helix 22
AC4
A
396 405Right-handed alpha
Helix 23
AC5
A
405 410Right-handed alpha
Helix 24
AC6
A
431 443Right-handed alpha
Helix 25
AC7
A
456 476Right-handed alpha
Helix 26
AC8
A
478 500Right-handed alpha
Helix 27
AC9
A
518 529Right-handed alpha
Helix 28
AD1
A
536 547Right-handed alpha
Helix 29
AD2
A
561 564Right-handed 310
Helix 30
AD3
A
568 579Right-handed alpha
Helix 31
AD4
A
626 636Right-handed alpha
Helix 32
AD5
A
645 651Right-handed alpha
Helix 33
AD6
A
662 670Right-handed alpha
Helix 34
AD7
A
688 692Right-handed alpha
Helix 35
AD8
A
700 705Right-handed alpha
Helix 36
AD9
A
736 746Right-handed alpha
Helix 37
AE1
A
752 756Right-handed 310
Helix 38
AE2
A
798 808Right-handed alpha
Helix 39
AE3
A
808 819Right-handed alpha
Helix 40
AE4
A
825 830Right-handed alpha
Helix 41
AE5
A
839 857Right-handed alpha
Helix 42
AE6
A
867 872Right-handed alpha
Helix 43
AE7
A
875 910Right-handed alpha
Helix 44
AE8
A
927 932Right-handed alpha
Helix 45
AE9
A
939 962Right-handed alpha
Helix 46
AF1
A
982 989Right-handed alpha
Helix 47
AF2
A
1013 1026Right-handed alpha
Helix 48
AF3
A
1030 1045Right-handed alpha
Helix 49
AF4
A
1054 1065Right-handed alpha
Helix 50
AF5
A
1067 1075Right-handed alpha
Helix 51
AF6
A
1099 1101Right-handed 310
Helix 52
AF7
A
1104 1114Right-handed alpha
Helix 53
AF8
A
1114 1131Right-handed alpha
Helix 54
AF9
A
1137 1169Right-handed alpha
Helix 55
AG1
A
1175 1178Right-handed 310
Helix 56
AG2
A
1179 1188Right-handed alpha
Helix 57
AG3
A
1193 1199Right-handed alpha
Helix 58
AG4
B
7 27Right-handed alpha
Helix 59
AG5
B
34 44Right-handed alpha
Helix 60
AG6
B
49 59Right-handed alpha
Helix 61
AG7
B
77 111Right-handed alpha
Helix 62
AG8
C
7 26Right-handed alpha
Helix 63
AG9
C
30 45Right-handed alpha
Helix 64
AH1
C
49 59Right-handed alpha
Helix 65
AH2
C
77 97Right-handed alpha
Helix 66
AH3
C
98 110Right-handed alpha
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There are 6 sheets in PDB entry 8ZEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
38 39anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 310first strand
Strand 2
A
502 506parallel
Strand 3
A
548 559parallel
Strand 4
A
602 608anti-parallel
Strand 5
A
580 583anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
353 354first strand
Strand 2
A
388 389parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 680first strand
Strand 2
A
788 789anti-parallel
Strand 3
A
760 763anti-parallel
Strand 4
A
773 776anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
693 695first strand
Strand 2
A
732 734anti-parallel
Strand 3
A
715 717anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1001 1003first strand
Strand 2
A
1093 1097anti-parallel
Strand 3
A
1081 1085anti-parallel
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