Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZEL entry

There is 1 chain in PDB entry 8ZEL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 14GLU 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8ZEL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 34Right-handed alpha
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
55 69Right-handed alpha
Helix 4
AA4
A
125 146Right-handed alpha
Helix 5
AA5
A
168 176Right-handed alpha
Helix 6
AA6
A
220 224Right-handed 310
Helix 7
AA7
A
226 242Right-handed alpha
Helix 8
AA8
A
243 245Right-handed 310
Helix 9
AA9
A
279 302Right-handed alpha
Helix 10
AB1
A
320 334Right-handed alpha
Helix 11
AB2
A
353 361Right-handed alpha
Helix 12
AB3
A
378 386Right-handed alpha
Helix 13
AB4
A
388 411Right-handed alpha
Helix 14
AB5
A
411 429Right-handed alpha
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There are 3 sheets in PDB entry 8ZEL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
106 112parallel
Strand 5
A
184 186parallel
Strand 6
A
363 364parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 191first strand
Strand 2
A
367 369parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
250 257first strand
Strand 2
A
268 277anti-parallel
Strand 3
A
202 211anti-parallel
Strand 4
A
304 309anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il