Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZEO entry

There are 4 chains in PDB entry 8ZEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 67	CYS 217
C	ALA 114	ASN 495
D	ASP 20	ASN 495
E	THR 66	CYS 217

There are 56 helices in PDB entry 8ZEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	67	84	Right-handed alpha
Helix 2	AA2	B	94	99	Right-handed alpha
Helix 3	AA3	B	104	108	Right-handed 310
Helix 4	AA4	B	116	120	Right-handed 310
Helix 5	AA5	B	123	130	Right-handed alpha
Helix 6	AA6	B	132	136	Right-handed 310
Helix 7	AA7	B	159	169	Right-handed alpha
Helix 8	AA8	B	177	190	Right-handed alpha
Helix 9	AA9	B	192	211	Right-handed alpha
Helix 10	AB1	C	122	142	Right-handed alpha
Helix 11	AB2	C	143	146	Right-handed 310
Helix 12	AB3	C	147	150	Right-handed 310
Helix 13	AB4	C	176	180	Right-handed 310
Helix 14	AB5	C	191	214	Right-handed alpha
Helix 15	AB6	C	215	218	Right-handed 310
Helix 16	AB7	C	258	264	Right-handed alpha
Helix 17	AB8	C	290	297	Right-handed alpha
Helix 18	AB9	C	304	316	Right-handed alpha
Helix 19	AC1	C	318	323	Right-handed alpha
Helix 20	AC2	C	341	350	Right-handed alpha
Helix 21	AC3	C	351	354	Right-handed 310
Helix 22	AC4	C	428	443	Right-handed alpha
Helix 23	AC5	C	452	460	Right-handed alpha
Helix 24	AC6	C	460	477	Right-handed alpha
Helix 25	AC7	C	486	490	Right-handed 310
Helix 26	AC8	D	23	34	Right-handed alpha
Helix 27	AC9	D	36	49	Right-handed alpha
Helix 28	AD1	D	87	105	Right-handed alpha
Helix 29	AD2	D	122	142	Right-handed alpha
Helix 30	AD3	D	143	146	Right-handed 310
Helix 31	AD4	D	147	150	Right-handed 310
Helix 32	AD5	D	176	180	Right-handed 310
Helix 33	AD6	D	191	214	Right-handed alpha
Helix 34	AD7	D	215	218	Right-handed 310
Helix 35	AD8	D	245	250	Right-handed alpha
Helix 36	AD9	D	258	264	Right-handed alpha
Helix 37	AE1	D	290	297	Right-handed alpha
Helix 38	AE2	D	304	316	Right-handed alpha
Helix 39	AE3	D	318	323	Right-handed alpha
Helix 40	AE4	D	341	350	Right-handed alpha
Helix 41	AE5	D	351	354	Right-handed 310
Helix 42	AE6	D	377	382	Right-handed alpha
Helix 43	AE7	D	428	443	Right-handed alpha
Helix 44	AE8	D	452	459	Right-handed alpha
Helix 45	AE9	D	460	477	Right-handed alpha
Helix 46	AF1	D	486	491	Right-handed 310
Helix 47	AF2	E	67	84	Right-handed alpha
Helix 48	AF3	E	94	99	Right-handed alpha
Helix 49	AF4	E	104	109	Right-handed alpha
Helix 50	AF5	E	116	120	Right-handed 310
Helix 51	AF6	E	123	131	Right-handed alpha
Helix 52	AF7	E	132	136	Right-handed 310
Helix 53	AF8	E	160	170	Right-handed alpha
Helix 54	AF9	E	177	191	Right-handed alpha
Helix 55	AG1	E	192	211	Right-handed alpha
Helix 56	AG2	E	211	216	Right-handed alpha

There are 11 sheets in PDB entry 8ZEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	C	162	170	anti-parallel
Strand 3	C	152	159	anti-parallel
Strand 4	C	233	239	anti-parallel
Strand 5	C	331	336	parallel
Strand 6	C	368	371	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	89	first strand
Strand 2	C	162	170	anti-parallel
Strand 3	C	390	395	anti-parallel
Strand 4	C	402	405	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	222	first strand
Strand 2	C	227	229	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	279	first strand
Strand 2	C	268	271	anti-parallel
Strand 3	C	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	411	412	first strand
Strand 2	C	422	423	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	78	79	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	371	first strand
Strand 2	D	331	336	parallel
Strand 3	D	234	239	parallel
Strand 4	D	152	159	anti-parallel
Strand 5	D	162	170	anti-parallel
Strand 6	D	390	395	anti-parallel
Strand 7	D	402	405	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	371	first strand
Strand 2	D	331	336	parallel
Strand 3	D	234	239	parallel
Strand 4	D	152	159	anti-parallel
Strand 5	D	162	170	anti-parallel
Strand 6	E	87	89	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	222	first strand
Strand 2	D	227	229	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	268	270	anti-parallel
Strand 3	D	302	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	411	414	first strand
Strand 2	D	420	423	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEO