Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZER entry

There are 9 chains in PDB entry 8ZER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 333	PRO 527
A	VAL 2	SER 121
C	LEU 335	GLY 526
D	VAL 2	SER 121
E	THR 333	GLY 526
F	VAL 2	SER 121
G	ASN 334	CYS 525
H	GLU 1	ALA 123
I	THR 333	ARG 355

There are 33 helices in PDB entry 8ZER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	338	343	Right-handed alpha
Helix 2	AA2	B	365	370	Right-handed alpha
Helix 3	AA3	B	404	408	Right-handed alpha
Helix 4	AA4	B	416	422	Right-handed alpha
Helix 5	AA5	B	502	505	Right-handed 310
Helix 6	AA6	A	86	90	Right-handed 310
Helix 7	AA7	C	338	343	Right-handed alpha
Helix 8	AA8	C	365	370	Right-handed alpha
Helix 9	AA9	C	404	408	Right-handed alpha
Helix 10	AB1	C	416	422	Right-handed alpha
Helix 11	AB2	C	502	505	Right-handed 310
Helix 12	AB3	D	86	90	Right-handed 310
Helix 13	AB4	E	337	343	Right-handed alpha
Helix 14	AB5	E	365	370	Right-handed alpha
Helix 15	AB6	E	385	390	Right-handed 310
Helix 16	AB7	E	404	408	Right-handed alpha
Helix 17	AB8	E	416	422	Right-handed alpha
Helix 18	AB9	E	502	505	Right-handed 310
Helix 19	AC1	F	86	90	Right-handed 310
Helix 20	AC2	G	338	343	Right-handed alpha
Helix 21	AC3	G	365	370	Right-handed alpha
Helix 22	AC4	G	385	390	Right-handed 310
Helix 23	AC5	G	404	408	Right-handed alpha
Helix 24	AC6	G	416	422	Right-handed alpha
Helix 25	AC7	G	502	505	Right-handed 310
Helix 26	AC8	H	86	90	Right-handed 310
Helix 27	AC9	I	337	343	Right-handed alpha
Helix 28	AD1	I	365	370	Right-handed alpha
Helix 29	AD2	I	384	388	Right-handed 310
Helix 30	AD3	I	405	410	Right-handed 310
Helix 31	AD4	I	416	422	Right-handed alpha
Helix 32	AD5	I	502	505	Right-handed 310
Helix 33	AD6	J	86	90	Right-handed 310

There are 36 sheets in PDB entry 8ZER. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	400	403	parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	394	398	anti-parallel
Strand 5	B	357	358	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	400	403	parallel
Strand 3	B	507	516	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	376	379	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	488	489	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	A	57	60	parallel
Strand 3	A	45	51	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	91	97	anti-parallel
Strand 6	A	115	119	anti-parallel
Strand 7	A	11	12	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	484	first strand
Strand 2	A	57	60	parallel
Strand 3	A	45	51	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	91	97	anti-parallel
Strand 6	A	110	111	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	7	first strand
Strand 2	A	18	23	anti-parallel
Strand 3	A	77	82	anti-parallel
Strand 4	A	67	71	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	105	107	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	400	403	parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	394	398	anti-parallel
Strand 5	C	357	358	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	348	349	first strand
Strand 2	C	400	403	parallel
Strand 3	C	507	516	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	376	379	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	D	57	60	parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	91	97	anti-parallel
Strand 6	D	115	119	anti-parallel
Strand 7	D	11	12	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	483	484	first strand
Strand 2	D	57	60	parallel
Strand 3	D	45	51	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	91	97	anti-parallel
Strand 6	D	110	111	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	18	23	anti-parallel
Strand 3	D	77	82	anti-parallel
Strand 4	D	67	71	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	105	107	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	394	403	parallel
Strand 3	E	357	358	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	348	349	first strand
Strand 2	E	394	403	parallel
Strand 3	E	507	516	anti-parallel
Strand 4	E	431	437	anti-parallel
Strand 5	E	376	379	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	452	454	first strand
Strand 2	E	492	494	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	483	484	first strand
Strand 2	F	57	60	parallel
Strand 3	F	45	51	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	91	97	anti-parallel
Strand 6	F	115	119	anti-parallel
Strand 7	F	11	12	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	483	484	first strand
Strand 2	F	57	60	parallel
Strand 3	F	45	51	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	91	97	anti-parallel
Strand 6	F	110	111	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	7	first strand
Strand 2	F	18	23	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	71	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	100	102	first strand
Strand 2	F	105	107	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	394	403	parallel
Strand 3	G	357	358	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	348	349	first strand
Strand 2	G	394	403	parallel
Strand 3	G	507	516	anti-parallel
Strand 4	G	431	437	anti-parallel
Strand 5	G	376	379	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	452	454	first strand
Strand 2	G	492	494	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	483	484	first strand
Strand 2	H	57	60	parallel
Strand 3	H	45	51	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	91	97	anti-parallel
Strand 6	H	115	119	anti-parallel
Strand 7	H	11	12	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	483	484	first strand
Strand 2	H	57	60	parallel
Strand 3	H	45	51	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	91	97	anti-parallel
Strand 6	H	110	111	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	102	first strand
Strand 2	H	105	107	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	348	349	first strand
Strand 2	I	400	403	parallel
Strand 3	I	507	516	anti-parallel
Strand 4	I	394	398	anti-parallel
Strand 5	I	357	358	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	348	349	first strand
Strand 2	I	400	403	parallel
Strand 3	I	507	516	anti-parallel
Strand 4	I	431	437	anti-parallel
Strand 5	I	376	379	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	452	454	first strand
Strand 2	I	492	494	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	483	484	first strand
Strand 2	J	57	60	parallel
Strand 3	J	45	51	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	91	97	anti-parallel
Strand 6	J	115	119	anti-parallel
Strand 7	J	11	12	parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	483	484	first strand
Strand 2	J	57	60	parallel
Strand 3	J	45	51	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	91	97	anti-parallel
Strand 6	J	110	111	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	6	7	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	71	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	101	102	first strand
Strand 2	J	105	106	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZER

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZER