Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZEV entry

There are 4 chains in PDB entry 8ZEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER -7	ALA 1102
B	SER -7	ALA 1102
C	SER -7	ALA 1102
D	SER -7	ALA 1102

There are 32 helices in PDB entry 8ZEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	872	876	Right-handed 310
Helix 2	AA2	A	887	904	Right-handed alpha
Helix 3	AA3	A	906	910	Right-handed 310
Helix 4	AA4	A	965	970	Right-handed 310
Helix 5	AA5	A	987	997	Right-handed alpha
Helix 6	AA6	A	1003	1006	Right-handed 310
Helix 7	AA7	A	1025	1040	Right-handed alpha
Helix 8	AA8	A	1058	1066	Right-handed alpha
Helix 9	AA9	B	872	876	Right-handed 310
Helix 10	AB1	B	887	904	Right-handed alpha
Helix 11	AB2	B	906	910	Right-handed 310
Helix 12	AB3	B	965	970	Right-handed 310
Helix 13	AB4	B	987	997	Right-handed alpha
Helix 14	AB5	B	1003	1006	Right-handed 310
Helix 15	AB6	B	1025	1040	Right-handed alpha
Helix 16	AB7	B	1058	1066	Right-handed alpha
Helix 17	AB8	C	872	876	Right-handed 310
Helix 18	AB9	C	887	904	Right-handed alpha
Helix 19	AC1	C	906	910	Right-handed 310
Helix 20	AC2	C	965	970	Right-handed 310
Helix 21	AC3	C	987	997	Right-handed alpha
Helix 22	AC4	C	1003	1006	Right-handed 310
Helix 23	AC5	C	1025	1040	Right-handed alpha
Helix 24	AC6	C	1058	1066	Right-handed alpha
Helix 25	AC7	D	872	876	Right-handed 310
Helix 26	AC8	D	887	904	Right-handed alpha
Helix 27	AC9	D	906	910	Right-handed 310
Helix 28	AD1	D	965	970	Right-handed 310
Helix 29	AD2	D	987	998	Right-handed alpha
Helix 30	AD3	D	1003	1006	Right-handed 310
Helix 31	AD4	D	1025	1040	Right-handed alpha
Helix 32	AD5	D	1058	1066	Right-handed alpha

There are 10 sheets in PDB entry 8ZEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	-2	864	first strand
Strand 2	A	931	938	anti-parallel
Strand 3	A	943	948	anti-parallel
Strand 4	A	951	960	anti-parallel
Strand 5	A	912	919	anti-parallel
Strand 6	A	1047	1057	anti-parallel
Strand 7	A	1092	1095	anti-parallel
Strand 8	A	1086	1089	anti-parallel
Strand 9	A	1074	1081	anti-parallel
Strand 10	A	1067	1068	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	986	first strand
Strand 2	A	1008	1011	anti-parallel
Strand 3	A	1017	1022	anti-parallel
Strand 4	A	1074	1081	anti-parallel
Strand 5	A	1086	1089	anti-parallel
Strand 6	A	1092	1095	anti-parallel
Strand 7	A	1047	1057	anti-parallel
Strand 8	A	1098	1101	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	883	884	first strand
Strand 2	A	878	880	anti-parallel
Strand 3	A	999	1001	anti-parallel

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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-2	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	948	anti-parallel
Strand 4	B	951	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1101	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1074	1081	anti-parallel
Strand 10	B	1017	1022	anti-parallel
Strand 11	B	1008	1011	anti-parallel
Strand 12	B	985	986	anti-parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-2	865	first strand
Strand 2	B	930	938	anti-parallel
Strand 3	B	943	948	anti-parallel
Strand 4	B	951	960	anti-parallel
Strand 5	B	912	919	anti-parallel
Strand 6	B	1047	1057	anti-parallel
Strand 7	B	1092	1101	anti-parallel
Strand 8	B	1086	1089	anti-parallel
Strand 9	B	1074	1081	anti-parallel
Strand 10	B	1067	1068	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	883	884	first strand
Strand 2	B	878	880	anti-parallel
Strand 3	B	999	1001	anti-parallel

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There are 24 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	985	986	first strand
Strand 2	C	1008	1011	anti-parallel
Strand 3	C	1017	1022	anti-parallel
Strand 4	C	1074	1081	anti-parallel
Strand 5	C	1086	1089	anti-parallel
Strand 6	C	1092	1101	anti-parallel
Strand 7	C	1047	1057	anti-parallel
Strand 8	C	912	919	anti-parallel
Strand 9	C	951	960	anti-parallel
Strand 10	C	943	948	anti-parallel
Strand 11	C	930	938	anti-parallel
Strand 12	C	-6	865	anti-parallel
Strand 13	D	-6	865	anti-parallel
Strand 14	D	930	938	anti-parallel
Strand 15	D	943	948	anti-parallel
Strand 16	D	951	960	anti-parallel
Strand 17	D	912	919	anti-parallel
Strand 18	D	1047	1057	anti-parallel
Strand 19	D	1092	1101	anti-parallel
Strand 20	D	1086	1089	anti-parallel
Strand 21	D	1074	1081	anti-parallel
Strand 22	D	1017	1022	anti-parallel
Strand 23	D	1008	1011	anti-parallel
Strand 24	D	985	986	anti-parallel

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There are 20 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1067	1068	first strand
Strand 2	C	1074	1081	anti-parallel
Strand 3	C	1086	1089	anti-parallel
Strand 4	C	1092	1101	anti-parallel
Strand 5	C	1047	1057	anti-parallel
Strand 6	C	912	919	anti-parallel
Strand 7	C	951	960	anti-parallel
Strand 8	C	943	948	anti-parallel
Strand 9	C	930	938	anti-parallel
Strand 10	C	-6	865	anti-parallel
Strand 11	D	-6	865	anti-parallel
Strand 12	D	930	938	anti-parallel
Strand 13	D	943	948	anti-parallel
Strand 14	D	951	960	anti-parallel
Strand 15	D	912	919	anti-parallel
Strand 16	D	1047	1057	anti-parallel
Strand 17	D	1092	1101	anti-parallel
Strand 18	D	1086	1089	anti-parallel
Strand 19	D	1074	1081	anti-parallel
Strand 20	D	1067	1068	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	883	884	first strand
Strand 2	C	878	880	anti-parallel
Strand 3	C	999	1001	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	883	884	first strand
Strand 2	D	878	880	anti-parallel
Strand 3	D	1000	1001	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZEV