Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZF8 entry

There is 1 chain in PDB entry 8ZF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLN 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8ZF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
65 75Right-handed alpha
Helix 3
AA3
A
105 118Right-handed alpha
Helix 4
AA4
A
124 131Right-handed alpha
Helix 5
AA5
A
132 143Right-handed alpha
Helix 6
AA6
A
151 153Right-handed 310
Helix 7
AA7
A
154 160Right-handed alpha
Helix 8
AA8
A
166 177Right-handed alpha
Helix 9
AA9
A
188 200Right-handed alpha
Helix 10
AB1
A
214 227Right-handed alpha
Helix 11
AB2
A
275 282Right-handed alpha
Helix 12
AB3
A
283 286Right-handed 310
Helix 13
AB4
A
287 292Right-handed alpha
Helix 14
AB5
A
293 295Right-handed 310
Helix 15
AB6
A
356 365Right-handed alpha
Helix 16
AB7
A
378 399Right-handed alpha
Helix 17
AB8
A
409 418Right-handed alpha
Helix 18
AB9
A
419 430Right-handed alpha
Helix 19
AC1
A
456 465Right-handed alpha
Helix 20
AC2
A
489 502Right-handed alpha
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There are 7 sheets in PDB entry 8ZF8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
262 267parallel
Strand 3
A
252 257anti-parallel
Strand 4
A
238 244anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
29 33parallel
Strand 3
A
6 9parallel
Strand 4
A
270 272parallel
Strand 5
A
476 478parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
51 54anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
208 210anti-parallel
Strand 3
A
79 81anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 145first strand
Strand 2
A
148 149anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 300first strand
Strand 2
A
448 451anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
321 322first strand
Strand 2
A
329 336anti-parallel
Strand 3
A
347 353anti-parallel
Strand 4
A
303 309anti-parallel
Strand 5
A
431 438anti-parallel
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