Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZFL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZFL entry

There are 5 chains in PDB entry 8ZFL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 22	LEU 533
B	PRO 22	LEU 533
C	PRO 22	LEU 533
D	PRO 22	LEU 533
E	PRO 22	LEU 533

There are 50 helices in PDB entry 8ZFL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	35	Right-handed alpha
Helix 2	AA2	A	91	96	Right-handed 310
Helix 3	AA3	A	242	249	Right-handed alpha
Helix 4	AA4	A	249	265	Right-handed alpha
Helix 5	AA5	A	277	295	Right-handed alpha
Helix 6	AA6	A	307	335	Right-handed alpha
Helix 7	AA7	A	336	339	Right-handed 310
Helix 8	AA8	A	344	359	Right-handed alpha
Helix 9	AA9	A	363	385	Right-handed alpha
Helix 10	AB1	A	487	532	Right-handed alpha
Helix 11	AB2	B	25	35	Right-handed alpha
Helix 12	AB3	B	91	96	Right-handed 310
Helix 13	AB4	B	242	249	Right-handed alpha
Helix 14	AB5	B	249	265	Right-handed alpha
Helix 15	AB6	B	277	295	Right-handed alpha
Helix 16	AB7	B	307	335	Right-handed alpha
Helix 17	AB8	B	336	339	Right-handed 310
Helix 18	AB9	B	344	359	Right-handed alpha
Helix 19	AC1	B	363	385	Right-handed alpha
Helix 20	AC2	B	487	532	Right-handed alpha
Helix 21	AC3	C	25	35	Right-handed alpha
Helix 22	AC4	C	91	96	Right-handed 310
Helix 23	AC5	C	242	249	Right-handed alpha
Helix 24	AC6	C	249	265	Right-handed alpha
Helix 25	AC7	C	277	295	Right-handed alpha
Helix 26	AC8	C	307	335	Right-handed alpha
Helix 27	AC9	C	336	339	Right-handed 310
Helix 28	AD1	C	344	359	Right-handed alpha
Helix 29	AD2	C	363	385	Right-handed alpha
Helix 30	AD3	C	487	532	Right-handed alpha
Helix 31	AD4	D	25	35	Right-handed alpha
Helix 32	AD5	D	91	96	Right-handed 310
Helix 33	AD6	D	242	249	Right-handed alpha
Helix 34	AD7	D	249	265	Right-handed alpha
Helix 35	AD8	D	277	295	Right-handed alpha
Helix 36	AD9	D	307	335	Right-handed alpha
Helix 37	AE1	D	336	339	Right-handed 310
Helix 38	AE2	D	344	359	Right-handed alpha
Helix 39	AE3	D	363	385	Right-handed alpha
Helix 40	AE4	D	487	532	Right-handed alpha
Helix 41	AE5	E	25	35	Right-handed alpha
Helix 42	AE6	E	91	96	Right-handed 310
Helix 43	AE7	E	242	249	Right-handed alpha
Helix 44	AE8	E	249	265	Right-handed alpha
Helix 45	AE9	E	277	295	Right-handed alpha
Helix 46	AF1	E	307	335	Right-handed alpha
Helix 47	AF2	E	336	339	Right-handed 310
Helix 48	AF3	E	344	359	Right-handed alpha
Helix 49	AF4	E	363	385	Right-handed alpha
Helix 50	AF5	E	487	532	Right-handed alpha

There are 15 sheets in PDB entry 8ZFL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	104	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	143	155	anti-parallel
Strand 4	A	72	85	anti-parallel
Strand 5	A	52	67	anti-parallel
Strand 6	A	185	189	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	104	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	143	155	anti-parallel
Strand 4	A	72	85	anti-parallel
Strand 5	A	52	67	anti-parallel
Strand 6	A	197	198	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	168	177	anti-parallel
Strand 3	A	228	240	anti-parallel
Strand 4	A	208	221	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	143	155	anti-parallel
Strand 4	B	72	85	anti-parallel
Strand 5	B	52	67	anti-parallel
Strand 6	B	185	189	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	104	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	143	155	anti-parallel
Strand 4	B	72	85	anti-parallel
Strand 5	B	52	67	anti-parallel
Strand 6	B	197	198	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	168	177	anti-parallel
Strand 3	B	228	240	anti-parallel
Strand 4	B	208	221	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	104	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	143	155	anti-parallel
Strand 4	C	72	85	anti-parallel
Strand 5	C	52	67	anti-parallel
Strand 6	C	185	189	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	104	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	143	155	anti-parallel
Strand 4	C	72	85	anti-parallel
Strand 5	C	52	67	anti-parallel
Strand 6	C	197	198	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	168	177	anti-parallel
Strand 3	C	228	240	anti-parallel
Strand 4	C	208	221	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	143	155	anti-parallel
Strand 4	D	72	85	anti-parallel
Strand 5	D	52	67	anti-parallel
Strand 6	D	185	189	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	143	155	anti-parallel
Strand 4	D	72	85	anti-parallel
Strand 5	D	52	67	anti-parallel
Strand 6	D	197	198	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	168	177	anti-parallel
Strand 3	D	228	240	anti-parallel
Strand 4	D	208	221	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	131	136	anti-parallel
Strand 3	E	143	155	anti-parallel
Strand 4	E	72	85	anti-parallel
Strand 5	E	52	67	anti-parallel
Strand 6	E	185	189	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	131	136	anti-parallel
Strand 3	E	143	155	anti-parallel
Strand 4	E	72	85	anti-parallel
Strand 5	E	52	67	anti-parallel
Strand 6	E	197	198	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	115	first strand
Strand 2	E	168	177	anti-parallel
Strand 3	E	228	240	anti-parallel
Strand 4	E	208	221	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZFL

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZFL