Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZFZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZFZ entry

There are 5 chains in PDB entry 8ZFZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	LEU 7	SER 343
D	VAL 40	LEU 283
A	VAL 5	LEU 377
R	CYS 17	LEU 315
G	SER 8	ARG 62

There are 27 helices in PDB entry 8ZFZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	15	Right-handed alpha
Helix 2	AA2	B	15	25	Right-handed alpha
Helix 3	AA3	B	29	35	Right-handed alpha
Helix 4	AA4	D	66	70	Right-handed 310
Helix 5	AA5	D	258	262	Right-handed 310
Helix 6	AA6	A	6	32	Right-handed alpha
Helix 7	AA7	A	42	44	Right-handed 310
Helix 8	AA8	A	45	54	Right-handed alpha
Helix 9	AA9	A	225	232	Right-handed 310
Helix 10	AB1	A	248	261	Right-handed alpha
Helix 11	AB2	A	262	266	Right-handed 310
Helix 12	AB3	A	276	287	Right-handed alpha
Helix 13	AB4	A	290	295	Right-handed alpha
Helix 14	AB5	A	314	333	Right-handed alpha
Helix 15	AB6	A	353	374	Right-handed alpha
Helix 16	AB7	R	23	56	Right-handed alpha
Helix 17	AB8	R	59	78	Right-handed alpha
Helix 18	AB9	R	78	86	Right-handed alpha
Helix 19	AC1	R	95	128	Right-handed alpha
Helix 20	AC2	R	138	157	Right-handed alpha
Helix 21	AC3	R	159	164	Right-handed alpha
Helix 22	AC4	R	183	219	Right-handed alpha
Helix 23	AC5	R	223	259	Right-handed alpha
Helix 24	AC6	R	269	295	Right-handed alpha
Helix 25	AC7	R	298	314	Right-handed alpha
Helix 26	AC8	G	9	23	Right-handed alpha
Helix 27	AC9	G	30	44	Right-handed alpha

There are 12 sheets in PDB entry 8ZFZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	336	341	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	135	140	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	160	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	251	254	anti-parallel
Strand 4	B	259	263	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	45	first strand
Strand 2	D	56	62	anti-parallel
Strand 3	D	116	121	anti-parallel
Strand 4	D	107	111	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	D	153	157	parallel
Strand 3	D	130	135	anti-parallel
Strand 4	D	72	77	anti-parallel
Strand 5	D	83	89	anti-parallel
Strand 6	D	97	98	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	249	254	anti-parallel
Strand 3	D	241	246	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	213	217	first strand
Strand 2	D	264	268	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	207	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	36	40	parallel
Strand 4	A	236	242	parallel
Strand 5	A	269	275	parallel
Strand 6	A	342	343	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZFZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZFZ