Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZGA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZGA entry

There are 6 chains in PDB entry 8ZGA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 298	ALA 365
B	PHE 298	ALA 365
C	PHE 298	ALA 365
D	PHE 298	ARG 366
E	PHE 298	ARG 366
F	PHE 298	ARG 366

There are 12 helices in PDB entry 8ZGA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	301	303	Right-handed 310
Helix 2	AA2	A	339	344	Right-handed alpha
Helix 3	AA3	B	301	303	Right-handed 310
Helix 4	AA4	B	339	344	Right-handed alpha
Helix 5	AA5	C	301	303	Right-handed 310
Helix 6	AA6	C	339	344	Right-handed alpha
Helix 7	AA7	D	301	303	Right-handed 310
Helix 8	AA8	D	339	344	Right-handed alpha
Helix 9	AA9	E	301	303	Right-handed 310
Helix 10	AB1	E	339	344	Right-handed alpha
Helix 11	AB2	F	301	303	Right-handed 310
Helix 12	AB3	F	339	344	Right-handed alpha

There are 12 sheets in PDB entry 8ZGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	305	306	first strand
Strand 2	A	319	320	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	338	first strand
Strand 2	A	323	326	anti-parallel
Strand 3	A	362	364	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	306	first strand
Strand 2	B	319	320	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	338	first strand
Strand 2	B	323	326	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	305	306	first strand
Strand 2	C	319	320	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	338	first strand
Strand 2	C	323	326	anti-parallel
Strand 3	C	362	364	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	305	306	first strand
Strand 2	D	319	320	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	336	338	first strand
Strand 2	D	323	326	anti-parallel
Strand 3	D	362	365	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	305	306	first strand
Strand 2	E	319	320	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	338	first strand
Strand 2	E	323	326	anti-parallel
Strand 3	E	362	364	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	305	306	first strand
Strand 2	F	319	320	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	336	338	first strand
Strand 2	F	323	326	anti-parallel
Strand 3	F	362	364	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZGA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZGA