Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZGE entry

There are 4 chains in PDB entry 8ZGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 33	PRO 738
B	PRO 33	PRO 738
U	ALA 36	LEU 622
V	ALA 36	LEU 622

There are 84 helices in PDB entry 8ZGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	37	Right-handed 310
Helix 2	AA2	A	49	62	Right-handed alpha
Helix 3	AA3	A	87	98	Right-handed alpha
Helix 4	AA4	A	121	133	Right-handed alpha
Helix 5	AA5	A	148	152	Right-handed 310
Helix 6	AA6	A	173	181	Right-handed alpha
Helix 7	AA7	A	191	201	Right-handed alpha
Helix 8	AA8	A	201	209	Right-handed alpha
Helix 9	AA9	A	258	266	Right-handed alpha
Helix 10	AB1	A	310	319	Right-handed alpha
Helix 11	AB2	A	339	354	Right-handed alpha
Helix 12	AB3	A	361	365	Right-handed 310
Helix 13	AB4	A	367	382	Right-handed alpha
Helix 14	AB5	A	401	410	Right-handed alpha
Helix 15	AB6	A	443	449	Right-handed alpha
Helix 16	AB7	A	469	475	Right-handed alpha
Helix 17	AB8	A	488	499	Right-handed alpha
Helix 18	AB9	A	527	532	Right-handed 310
Helix 19	AC1	A	536	545	Right-handed alpha
Helix 20	AC2	A	548	555	Right-handed alpha
Helix 21	AC3	A	573	588	Right-handed alpha
Helix 22	AC4	A	613	618	Right-handed alpha
Helix 23	AC5	A	619	630	Right-handed alpha
Helix 24	AC6	A	630	639	Right-handed alpha
Helix 25	AC7	B	35	37	Right-handed 310
Helix 26	AC8	B	49	62	Right-handed alpha
Helix 27	AC9	B	87	98	Right-handed alpha
Helix 28	AD1	B	121	133	Right-handed alpha
Helix 29	AD2	B	148	152	Right-handed 310
Helix 30	AD3	B	173	181	Right-handed alpha
Helix 31	AD4	B	191	201	Right-handed alpha
Helix 32	AD5	B	201	209	Right-handed alpha
Helix 33	AD6	B	258	266	Right-handed alpha
Helix 34	AD7	B	310	319	Right-handed alpha
Helix 35	AD8	B	339	354	Right-handed alpha
Helix 36	AD9	B	361	365	Right-handed 310
Helix 37	AE1	B	367	382	Right-handed alpha
Helix 38	AE2	B	401	410	Right-handed alpha
Helix 39	AE3	B	443	449	Right-handed alpha
Helix 40	AE4	B	469	475	Right-handed alpha
Helix 41	AE5	B	488	499	Right-handed alpha
Helix 42	AE6	B	527	532	Right-handed 310
Helix 43	AE7	B	536	545	Right-handed alpha
Helix 44	AE8	B	548	555	Right-handed alpha
Helix 45	AE9	B	573	588	Right-handed alpha
Helix 46	AF1	B	613	618	Right-handed alpha
Helix 47	AF2	B	619	630	Right-handed alpha
Helix 48	AF3	B	630	639	Right-handed alpha
Helix 49	AF4	U	66	76	Right-handed alpha
Helix 50	AF5	U	96	109	Right-handed alpha
Helix 51	AF6	U	136	156	Right-handed alpha
Helix 52	AF7	U	175	182	Right-handed alpha
Helix 53	AF8	U	217	222	Right-handed alpha
Helix 54	AF9	U	244	249	Right-handed 310
Helix 55	AG1	U	266	276	Right-handed alpha
Helix 56	AG2	U	300	317	Right-handed alpha
Helix 57	AG3	U	352	365	Right-handed alpha
Helix 58	AG4	U	381	386	Right-handed alpha
Helix 59	AG5	U	387	389	Right-handed 310
Helix 60	AG6	U	407	427	Right-handed alpha
Helix 61	AG7	U	443	459	Right-handed alpha
Helix 62	AG8	U	503	512	Right-handed alpha
Helix 63	AG9	U	520	525	Right-handed alpha
Helix 64	AH1	U	526	528	Right-handed 310
Helix 65	AH2	U	534	541	Right-handed alpha
Helix 66	AH3	U	597	601	Right-handed 310
Helix 67	AH4	V	66	76	Right-handed alpha
Helix 68	AH5	V	96	109	Right-handed alpha
Helix 69	AH6	V	136	156	Right-handed alpha
Helix 70	AH7	V	175	182	Right-handed alpha
Helix 71	AH8	V	217	222	Right-handed alpha
Helix 72	AH9	V	244	249	Right-handed 310
Helix 73	AI1	V	266	276	Right-handed alpha
Helix 74	AI2	V	300	317	Right-handed alpha
Helix 75	AI3	V	352	365	Right-handed alpha
Helix 76	AI4	V	381	386	Right-handed alpha
Helix 77	AI5	V	387	389	Right-handed 310
Helix 78	AI6	V	407	427	Right-handed alpha
Helix 79	AI7	V	443	459	Right-handed alpha
Helix 80	AI8	V	503	512	Right-handed alpha
Helix 81	AI9	V	520	525	Right-handed alpha
Helix 82	AJ1	V	526	528	Right-handed 310
Helix 83	AJ2	V	534	541	Right-handed alpha
Helix 84	AJ3	V	597	601	Right-handed 310

There are 30 sheets in PDB entry 8ZGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	69	first strand
Strand 2	A	39	44	parallel
Strand 3	A	107	111	parallel
Strand 4	A	165	172	anti-parallel
Strand 5	A	136	139	anti-parallel
Strand 6	A	210	213	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	251	253	anti-parallel
Strand 3	A	219	221	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	233	first strand
Strand 2	A	238	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	278	279	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	360	first strand
Strand 2	A	328	334	parallel
Strand 3	A	298	304	parallel
Strand 4	A	387	392	parallel
Strand 5	A	464	468	anti-parallel
Strand 6	A	413	416	anti-parallel
Strand 7	A	504	507	parallel
Strand 8	A	455	458	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	514	515	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	428	429	first strand
Strand 2	A	460	461	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	432	first strand
Strand 2	A	438	439	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	563	first strand
Strand 2	A	566	570	anti-parallel
Strand 3	A	707	712	anti-parallel
Strand 4	A	673	678	anti-parallel
Strand 5	A	729	736	anti-parallel
Strand 6	A	648	656	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	686	687	first strand
Strand 2	A	726	727	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	A	691	693	anti-parallel
Strand 3	A	719	721	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	69	first strand
Strand 2	B	39	44	parallel
Strand 3	B	107	111	parallel
Strand 4	B	165	172	anti-parallel
Strand 5	B	136	139	anti-parallel
Strand 6	B	210	213	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	251	253	anti-parallel
Strand 3	B	219	221	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	233	first strand
Strand 2	B	238	242	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	274	first strand
Strand 2	B	278	279	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	360	first strand
Strand 2	B	328	334	parallel
Strand 3	B	298	304	parallel
Strand 4	B	387	392	parallel
Strand 5	B	464	468	anti-parallel
Strand 6	B	413	416	anti-parallel
Strand 7	B	504	507	parallel
Strand 8	B	455	458	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	420	first strand
Strand 2	B	514	515	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	428	429	first strand
Strand 2	B	460	461	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	432	first strand
Strand 2	B	438	439	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	563	first strand
Strand 2	B	566	570	anti-parallel
Strand 3	B	707	712	anti-parallel
Strand 4	B	673	678	anti-parallel
Strand 5	B	729	736	anti-parallel
Strand 6	B	648	656	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	686	687	first strand
Strand 2	B	726	727	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	B	691	693	anti-parallel
Strand 3	B	719	721	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	115	117	first strand
Strand 2	U	84	90	parallel
Strand 3	U	54	60	parallel
Strand 4	U	162	164	parallel
Strand 5	U	238	240	anti-parallel
Strand 6	U	187	190	anti-parallel
Strand 7	U	280	283	parallel
Strand 8	U	228	231	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	170	171	first strand
Strand 2	U	289	290	anti-parallel

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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	370	372	first strand
Strand 2	U	343	346	parallel
Strand 3	U	430	434	parallel
Strand 4	U	494	502	anti-parallel
Strand 5	U	464	470	anti-parallel
Strand 6	U	548	551	parallel
Strand 7	U	487	489	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	438	440	first strand
Strand 2	U	556	558	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	115	117	first strand
Strand 2	V	84	90	parallel
Strand 3	V	54	60	parallel
Strand 4	V	162	164	parallel
Strand 5	V	238	240	anti-parallel
Strand 6	V	187	190	anti-parallel
Strand 7	V	280	283	parallel
Strand 8	V	228	231	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	170	171	first strand
Strand 2	V	289	290	anti-parallel

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There are 7 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	370	372	first strand
Strand 2	V	343	346	parallel
Strand 3	V	430	434	parallel
Strand 4	V	494	502	anti-parallel
Strand 5	V	464	470	anti-parallel
Strand 6	V	548	551	parallel
Strand 7	V	487	489	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	438	440	first strand
Strand 2	V	556	558	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZGE