Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZGI entry

There are 2 chains in PDB entry 8ZGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4VAL 394
B
 SER 4VAL 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 8ZGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
13 25Right-handed alpha
Helix 3
AA3
A
67 81Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
106 114Right-handed alpha
Helix 6
AA6
A
133 143Right-handed alpha
Helix 7
AA7
A
152 169Right-handed alpha
Helix 8
AA8
A
171 176Right-handed alpha
Helix 9
AA9
A
178 193Right-handed alpha
Helix 10
AB1
A
200 206Right-handed alpha
Helix 11
AB2
A
218 224Right-handed alpha
Helix 12
AB3
A
224 236Right-handed alpha
Helix 13
AB4
A
236 241Right-handed alpha
Helix 14
AB5
A
259 274Right-handed alpha
Helix 15
AB6
A
295 309Right-handed alpha
Helix 16
AB7
A
326 335Right-handed alpha
Helix 17
AB8
A
346 355Right-handed alpha
Helix 18
AB9
A
386 390Right-handed 310
Helix 19
AC1
B
5 26Right-handed alpha
Helix 20
AC2
B
67 80Right-handed alpha
Helix 21
AC3
B
97 101Right-handed 310
Helix 22
AC4
B
106 112Right-handed alpha
Helix 23
AC5
B
125 130Right-handed alpha
Helix 24
AC6
B
133 143Right-handed alpha
Helix 25
AC7
B
152 169Right-handed alpha
Helix 26
AC8
B
172 177Right-handed alpha
Helix 27
AC9
B
178 193Right-handed alpha
Helix 28
AD1
B
200 206Right-handed alpha
Helix 29
AD2
B
216 224Right-handed alpha
Helix 30
AD3
B
224 237Right-handed alpha
Helix 31
AD4
B
259 274Right-handed alpha
Helix 32
AD5
B
295 307Right-handed alpha
Helix 33
AD6
B
326 335Right-handed alpha
Helix 34
AD7
B
345 354Right-handed alpha
Helix 35
AD8
B
386 390Right-handed 310
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There are 7 sheets in PDB entry 8ZGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
88 92parallel
Strand 3
A
144 147parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
122 125anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 213first strand
Strand 2
A
379 383parallel
Strand 3
A
360 366parallel
Strand 4
A
247 253parallel
Strand 5
A
288 292parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
340 341parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
88 92parallel
Strand 3
B
144 147parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
122 123anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
212 213first strand
Strand 2
B
379 383parallel
Strand 3
B
360 366parallel
Strand 4
B
247 253parallel
Strand 5
B
288 292parallel
Strand 6
B
341 343parallel
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