Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZGP entry

There are 2 chains in PDB entry 8ZGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 747
B
 MET 1PHE 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 80 helices in PDB entry 8ZGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 3Right-handed 310
Helix 2
AA2
A
4 33Right-handed alpha
Helix 3
AA3
A
51 65Right-handed alpha
Helix 4
AA4
A
66 69Right-handed 310
Helix 5
AA5
A
82 104Right-handed alpha
Helix 6
AA6
A
107 111Right-handed 310
Helix 7
AA7
A
112 129Right-handed alpha
Helix 8
AA8
A
142 161Right-handed alpha
Helix 9
AA9
A
163 165Right-handed 310
Helix 10
AB1
A
166 173Right-handed alpha
Helix 11
AB2
A
182 202Right-handed alpha
Helix 12
AB3
A
218 222Right-handed 310
Helix 13
AB4
A
226 255Right-handed alpha
Helix 14
AB5
A
266 271Right-handed alpha
Helix 15
AB6
A
274 279Right-handed alpha
Helix 16
AB7
A
280 307Right-handed alpha
Helix 17
AB8
A
321 326Right-handed alpha
Helix 18
AB9
A
327 359Right-handed alpha
Helix 19
AC1
A
366 394Right-handed alpha
Helix 20
AC2
A
398 400Right-handed 310
Helix 21
AC3
A
401 406Right-handed alpha
Helix 22
AC4
A
416 436Right-handed alpha
Helix 23
AC5
A
438 444Right-handed alpha
Helix 24
AC6
A
449 465Right-handed alpha
Helix 25
AC7
A
466 471Right-handed 310
Helix 26
AC8
A
477 512Right-handed alpha
Helix 27
AC9
A
516 539Right-handed alpha
Helix 28
AD1
A
540 543Right-handed 310
Helix 29
AD2
A
549 568Right-handed alpha
Helix 30
AD3
A
570 581Right-handed alpha
Helix 31
AD4
A
586 589Right-handed 310
Helix 32
AD5
A
590 606Right-handed alpha
Helix 33
AD6
A
608 614Right-handed alpha
Helix 34
AD7
A
617 625Right-handed alpha
Helix 35
AD8
A
627 658Right-handed alpha
Helix 36
AD9
A
664 686Right-handed alpha
Helix 37
AE1
A
686 701Right-handed alpha
Helix 38
AE2
A
702 707Right-handed alpha
Helix 39
AE3
A
708 713Right-handed alpha
Helix 40
AE4
A
714 747Right-handed alpha
Helix 41
AE5
B
1 3Right-handed 310
Helix 42
AE6
B
4 33Right-handed alpha
Helix 43
AE7
B
51 65Right-handed alpha
Helix 44
AE8
B
66 69Right-handed 310
Helix 45
AE9
B
82 104Right-handed alpha
Helix 46
AF1
B
107 111Right-handed 310
Helix 47
AF2
B
112 129Right-handed alpha
Helix 48
AF3
B
142 161Right-handed alpha
Helix 49
AF4
B
163 165Right-handed 310
Helix 50
AF5
B
166 173Right-handed alpha
Helix 51
AF6
B
182 202Right-handed alpha
Helix 52
AF7
B
218 222Right-handed 310
Helix 53
AF8
B
226 255Right-handed alpha
Helix 54
AF9
B
266 271Right-handed alpha
Helix 55
AG1
B
274 279Right-handed alpha
Helix 56
AG2
B
280 307Right-handed alpha
Helix 57
AG3
B
321 326Right-handed alpha
Helix 58
AG4
B
327 359Right-handed alpha
Helix 59
AG5
B
366 394Right-handed alpha
Helix 60
AG6
B
398 400Right-handed 310
Helix 61
AG7
B
401 406Right-handed alpha
Helix 62
AG8
B
416 436Right-handed alpha
Helix 63
AG9
B
438 444Right-handed alpha
Helix 64
AH1
B
449 465Right-handed alpha
Helix 65
AH2
B
466 471Right-handed 310
Helix 66
AH3
B
477 512Right-handed alpha
Helix 67
AH4
B
516 539Right-handed alpha
Helix 68
AH5
B
540 543Right-handed 310
Helix 69
AH6
B
549 568Right-handed alpha
Helix 70
AH7
B
570 581Right-handed alpha
Helix 71
AH8
B
586 589Right-handed 310
Helix 72
AH9
B
590 606Right-handed alpha
Helix 73
AI1
B
608 614Right-handed alpha
Helix 74
AI2
B
617 625Right-handed alpha
Helix 75
AI3
B
627 658Right-handed alpha
Helix 76
AI4
B
664 686Right-handed alpha
Helix 77
AI5
B
686 701Right-handed alpha
Helix 78
AI6
B
702 707Right-handed alpha
Helix 79
AI7
B
708 713Right-handed alpha
Helix 80
AI8
B
714 747Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8ZGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
39 42anti-parallel
Strand 3
A
138 141parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
39 42anti-parallel
Strand 3
B
138 141parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
71 72first strand
Strand 2
B
75 76anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il