Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZH8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZH8 entry

There are 7 chains in PDB entry 8ZH8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ALA 3	ALA 346
N	GLN 1	SER 128
B	LEU 4	ASN 340
G	GLN 11	PHE 61
A	VAL 5	VAL 246
S	VAL 2	LEU 235
Q	GLY 3	PHE 26

There are 37 helices in PDB entry 8ZH8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	7	18	Right-handed alpha
Helix 2	AA2	R	21	30	Right-handed alpha
Helix 3	AA3	R	41	73	Right-handed alpha
Helix 4	AA4	R	74	77	Right-handed 310
Helix 5	AA5	R	78	98	Right-handed alpha
Helix 6	AA6	R	98	107	Right-handed alpha
Helix 7	AA7	R	113	149	Right-handed alpha
Helix 8	AA8	R	151	155	Right-handed 310
Helix 9	AA9	R	158	177	Right-handed alpha
Helix 10	AB1	R	178	183	Right-handed alpha
Helix 11	AB2	R	192	195	Right-handed 310
Helix 12	AB3	R	207	223	Right-handed alpha
Helix 13	AB4	R	223	243	Right-handed alpha
Helix 14	AB5	R	264	299	Right-handed alpha
Helix 15	AB6	R	300	305	Right-handed alpha
Helix 16	AB7	R	306	323	Right-handed alpha
Helix 17	AB8	R	323	335	Right-handed alpha
Helix 18	AB9	R	336	346	Right-handed alpha
Helix 19	AC1	N	28	32	Right-handed 310
Helix 20	AC2	N	87	91	Right-handed 310
Helix 21	AC3	B	5	25	Right-handed alpha
Helix 22	AC4	B	29	34	Right-handed alpha
Helix 23	AC5	B	35	37	Right-handed 310
Helix 24	AC6	B	128	132	Right-handed 310
Helix 25	AC7	G	12	24	Right-handed alpha
Helix 26	AC8	G	29	44	Right-handed alpha
Helix 27	AC9	G	45	48	Right-handed 310
Helix 28	AD1	A	6	31	Right-handed alpha
Helix 29	AD2	A	114	130	Right-handed alpha
Helix 30	AD3	A	145	156	Right-handed alpha
Helix 31	AD4	A	159	164	Right-handed alpha
Helix 32	AD5	A	165	170	Right-handed 310
Helix 33	AD6	A	183	204	Right-handed alpha
Helix 34	AD7	A	223	243	Right-handed alpha
Helix 35	AD8	S	28	32	Right-handed 310
Helix 36	AD9	S	87	91	Right-handed 310
Helix 37	AE1	Q	4	14	Right-handed alpha

There are 15 sheets in PDB entry 8ZH8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	184	191	first strand
Strand 2	R	196	203	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	88	94	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	76	first strand
Strand 2	A	79	84	anti-parallel
Strand 3	A	33	39	parallel
Strand 4	A	105	111	parallel
Strand 5	A	138	144	parallel
Strand 6	A	211	215	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	99	anti-parallel
Strand 4	S	33	39	anti-parallel
Strand 5	S	45	51	anti-parallel
Strand 6	S	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	231	234	parallel
Strand 3	S	214	219	anti-parallel
Strand 4	S	162	167	anti-parallel
Strand 5	S	174	178	anti-parallel
Strand 6	S	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZH8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZH8