Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZHR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZHR entry

There are 4 chains in PDB entry 8ZHR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	CYS 29	ARG 322
B	GLN 29	VAL 521
F	CYS 29	ALA 513
A	GLN 29	VAL 521

There are 23 helices in PDB entry 8ZHR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	90	94	Right-handed 310
Helix 2	AA2	E	103	106	Right-handed 310
Helix 3	AA3	E	117	121	Right-handed 310
Helix 4	AA4	E	239	243	Right-handed 310
Helix 5	AA5	E	245	322	Right-handed alpha
Helix 6	AA6	B	102	105	Right-handed 310
Helix 7	AA7	B	116	120	Right-handed 310
Helix 8	AA8	B	237	241	Right-handed 310
Helix 9	AA9	B	245	323	Right-handed alpha
Helix 10	AB1	B	416	419	Right-handed 310
Helix 11	AB2	B	436	440	Right-handed 310
Helix 12	AB3	F	104	107	Right-handed 310
Helix 13	AB4	F	117	121	Right-handed 310
Helix 14	AB5	F	239	243	Right-handed 310
Helix 15	AB6	F	244	319	Right-handed alpha
Helix 16	AB7	F	325	337	Right-handed alpha
Helix 17	AB8	F	425	428	Right-handed 310
Helix 18	AB9	A	85	88	Right-handed 310
Helix 19	AC1	A	103	106	Right-handed 310
Helix 20	AC2	A	116	120	Right-handed 310
Helix 21	AC3	A	237	241	Right-handed 310
Helix 22	AC4	A	246	322	Right-handed alpha
Helix 23	AC5	A	416	419	Right-handed 310

There are 23 sheets in PDB entry 8ZHR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	34	first strand
Strand 2	E	48	54	anti-parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	97	100	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	43	first strand
Strand 2	E	134	144	parallel
Strand 3	E	122	129	anti-parallel
Strand 4	E	64	69	anti-parallel
Strand 5	E	75	80	anti-parallel
Strand 6	E	83	84	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	191	first strand
Strand 2	E	202	210	anti-parallel
Strand 3	E	162	171	anti-parallel
Strand 4	E	151	156	anti-parallel
Strand 5	F	230	237	parallel
Strand 6	F	218	223	anti-parallel
Strand 7	F	176	180	anti-parallel
Strand 8	F	186	187	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	176	180	anti-parallel
Strand 3	E	218	224	anti-parallel
Strand 4	E	229	237	anti-parallel
Strand 5	F	151	157	parallel
Strand 6	F	162	171	anti-parallel
Strand 7	F	202	210	anti-parallel
Strand 8	F	190	191	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	176	180	anti-parallel
Strand 3	E	218	224	anti-parallel
Strand 4	E	229	237	anti-parallel
Strand 5	F	151	157	parallel
Strand 6	F	162	171	anti-parallel
Strand 7	F	202	210	anti-parallel
Strand 8	F	195	196	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	47	53	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	96	98	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	41	first strand
Strand 2	B	132	142	parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	63	67	anti-parallel
Strand 5	B	76	79	anti-parallel
Strand 6	B	82	83	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	156	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	201	209	anti-parallel
Strand 4	B	190	195	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	186	first strand
Strand 2	B	175	179	anti-parallel
Strand 3	B	216	222	anti-parallel
Strand 4	B	229	235	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	343	first strand
Strand 2	B	349	352	anti-parallel
Strand 3	B	497	499	anti-parallel
Strand 4	B	385	391	anti-parallel
Strand 5	B	326	327	parallel
Strand 6	A	325	327	anti-parallel
Strand 7	A	385	391	parallel
Strand 8	A	497	500	anti-parallel
Strand 9	A	349	352	anti-parallel
Strand 10	A	341	343	anti-parallel

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	516	517	first strand
Strand 2	A	471	474	anti-parallel
Strand 3	A	460	465	anti-parallel
Strand 4	A	449	455	anti-parallel
Strand 5	A	385	391	anti-parallel
Strand 6	A	325	327	parallel
Strand 7	B	326	327	anti-parallel
Strand 8	B	385	391	parallel
Strand 9	B	449	455	anti-parallel
Strand 10	B	460	465	anti-parallel
Strand 11	B	471	474	anti-parallel
Strand 12	A	516	517	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	484	490	anti-parallel
Strand 3	B	398	404	anti-parallel
Strand 4	B	421	427	anti-parallel
Strand 5	B	430	433	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	34	first strand
Strand 2	F	48	55	anti-parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	97	103	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	42	first strand
Strand 2	F	133	143	parallel
Strand 3	F	122	130	anti-parallel
Strand 4	F	64	69	anti-parallel
Strand 5	F	74	80	anti-parallel
Strand 6	F	83	84	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	394	400	parallel
Strand 3	F	508	510	anti-parallel
Strand 4	F	361	364	anti-parallel
Strand 5	F	353	355	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	394	400	parallel
Strand 3	F	459	465	anti-parallel
Strand 4	F	470	475	anti-parallel
Strand 5	F	481	485	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	383	385	first strand
Strand 2	F	494	499	anti-parallel
Strand 3	F	407	413	anti-parallel
Strand 4	F	430	436	anti-parallel
Strand 5	F	440	443	anti-parallel
Strand 6	F	449	451	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	47	54	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	96	102	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	132	142	parallel
Strand 3	A	121	129	anti-parallel
Strand 4	A	63	67	anti-parallel
Strand 5	A	76	79	anti-parallel
Strand 6	A	82	83	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	157	first strand
Strand 2	A	160	170	anti-parallel
Strand 3	A	201	208	anti-parallel
Strand 4	A	190	195	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	220	222	anti-parallel
Strand 3	A	229	230	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	234	235	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	484	490	anti-parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	421	427	anti-parallel
Strand 5	A	430	433	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZHR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZHR