Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZI9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZI9 entry

There are 2 chains in PDB entry 8ZI9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
M	MET 6	LEU 781
F	THR 5	PHE 375

There are 53 helices in PDB entry 8ZI9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	M	12	17	Right-handed alpha
Helix 2	AA2	M	19	28	Right-handed alpha
Helix 3	AA3	M	81	85	Right-handed 310
Helix 4	AA4	M	89	93	Right-handed 310
Helix 5	AA5	M	97	111	Right-handed alpha
Helix 6	AA6	M	131	134	Right-handed 310
Helix 7	AA7	M	135	143	Right-handed alpha
Helix 8	AA8	M	153	169	Right-handed alpha
Helix 9	AA9	M	183	199	Right-handed alpha
Helix 10	AB1	M	217	231	Right-handed alpha
Helix 11	AB2	M	270	274	Right-handed 310
Helix 12	AB3	M	283	291	Right-handed alpha
Helix 13	AB4	M	294	302	Right-handed alpha
Helix 14	AB5	M	306	309	Right-handed 310
Helix 15	AB6	M	310	315	Right-handed alpha
Helix 16	AB7	M	324	338	Right-handed alpha
Helix 17	AB8	M	342	360	Right-handed alpha
Helix 18	AB9	M	378	389	Right-handed alpha
Helix 19	AC1	M	391	401	Right-handed alpha
Helix 20	AC2	M	416	448	Right-handed alpha
Helix 21	AC3	M	472	505	Right-handed alpha
Helix 22	AC4	M	514	522	Right-handed alpha
Helix 23	AC5	M	529	540	Right-handed alpha
Helix 24	AC6	M	544	557	Right-handed alpha
Helix 25	AC7	M	592	598	Right-handed alpha
Helix 26	AC8	M	602	611	Right-handed alpha
Helix 27	AC9	M	615	620	Right-handed alpha
Helix 28	AD1	M	646	663	Right-handed alpha
Helix 29	AD2	M	685	697	Right-handed alpha
Helix 30	AD3	M	697	706	Right-handed alpha
Helix 31	AD4	M	715	723	Right-handed alpha
Helix 32	AD5	M	724	726	Right-handed 310
Helix 33	AD6	M	739	748	Right-handed alpha
Helix 34	AD7	M	766	781	Right-handed alpha
Helix 35	AD8	F	56	61	Right-handed alpha
Helix 36	AD9	F	78	93	Right-handed alpha
Helix 37	AE1	F	97	101	Right-handed 310
Helix 38	AE2	F	112	126	Right-handed alpha
Helix 39	AE3	F	137	145	Right-handed alpha
Helix 40	AE4	F	172	175	Right-handed 310
Helix 41	AE5	F	181	194	Right-handed alpha
Helix 42	AE6	F	202	217	Right-handed alpha
Helix 43	AE7	F	222	233	Right-handed alpha
Helix 44	AE8	F	252	257	Right-handed alpha
Helix 45	AE9	F	258	262	Right-handed 310
Helix 46	AF1	F	273	285	Right-handed alpha
Helix 47	AF2	F	289	296	Right-handed alpha
Helix 48	AF3	F	301	306	Right-handed 310
Helix 49	AF4	F	308	321	Right-handed alpha
Helix 50	AF5	F	337	349	Right-handed alpha
Helix 51	AF6	F	350	355	Right-handed 310
Helix 52	AF7	F	359	366	Right-handed alpha
Helix 53	AF8	F	367	372	Right-handed 310

There are 14 sheets in PDB entry 8ZI9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	39	40	first strand
Strand 2	M	46	47	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	49	51	first strand
Strand 2	M	61	63	anti-parallel
Strand 3	M	68	69	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	115	117	first strand
Strand 2	M	122	125	anti-parallel
Strand 3	M	666	673	parallel
Strand 4	M	172	177	parallel
Strand 5	M	454	460	parallel
Strand 6	M	247	252	anti-parallel
Strand 7	M	258	264	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	232	233	first strand
Strand 2	M	241	242	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	364	366	first strand
Strand 2	M	373	375	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	403	405	first strand
Strand 2	M	410	412	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	577	581	first strand
Strand 2	M	584	588	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	711	714	first strand
Strand 2	M	762	765	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	F	103	107	parallel
Strand 3	F	131	136	parallel
Strand 4	F	357	358	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	29	31	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	35	38	anti-parallel
Strand 3	F	65	68	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	176	178	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	150	155	anti-parallel
Strand 4	F	297	300	parallel
Strand 5	F	329	330	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	238	242	first strand
Strand 2	F	245	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZI9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZI9