Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZIK entry

There are 4 chains in PDB entry 8ZIK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 ARG 14GLU 320
B
 ARG 14GLU 320
A
 ARG 14GLU 320
C
 ARG 14GLU 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8ZIK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
42 53Right-handed alpha
Helix 2
AA2
D
62 67Right-handed alpha
Helix 3
AA3
D
76 93Right-handed alpha
Helix 4
AA4
D
114 128Right-handed alpha
Helix 5
AA5
D
147 165Right-handed alpha
Helix 6
AA6
D
177 181Right-handed 310
Helix 7
AA7
D
195 200Right-handed alpha
Helix 8
AA8
D
233 239Right-handed alpha
Helix 9
AA9
D
239 249Right-handed alpha
Helix 10
AB1
D
263 280Right-handed alpha
Helix 11
AB2
D
310 320Right-handed alpha
Helix 12
AB3
B
42 53Right-handed alpha
Helix 13
AB4
B
62 67Right-handed alpha
Helix 14
AB5
B
76 93Right-handed alpha
Helix 15
AB6
B
114 128Right-handed alpha
Helix 16
AB7
B
147 165Right-handed alpha
Helix 17
AB8
B
177 185Right-handed 310
Helix 18
AB9
B
195 200Right-handed alpha
Helix 19
AC1
B
201 203Right-handed 310
Helix 20
AC2
B
233 250Right-handed alpha
Helix 21
AC3
B
263 280Right-handed alpha
Helix 22
AC4
B
310 320Right-handed alpha
Helix 23
AC5
A
42 53Right-handed alpha
Helix 24
AC6
A
62 67Right-handed alpha
Helix 25
AC7
A
76 93Right-handed alpha
Helix 26
AC8
A
114 128Right-handed alpha
Helix 27
AC9
A
147 165Right-handed alpha
Helix 28
AD1
A
177 185Right-handed 310
Helix 29
AD2
A
195 200Right-handed alpha
Helix 30
AD3
A
233 250Right-handed alpha
Helix 31
AD4
A
263 280Right-handed alpha
Helix 32
AD5
A
310 319Right-handed alpha
Helix 33
AD6
C
42 53Right-handed alpha
Helix 34
AD7
C
62 67Right-handed alpha
Helix 35
AD8
C
76 93Right-handed alpha
Helix 36
AD9
C
114 128Right-handed alpha
Helix 37
AE1
C
147 165Right-handed alpha
Helix 38
AE2
C
177 185Right-handed 310
Helix 39
AE3
C
195 201Right-handed alpha
Helix 40
AE4
C
233 249Right-handed alpha
Helix 41
AE5
C
263 280Right-handed alpha
Helix 42
AE6
C
310 320Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8ZIK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
15 20first strand
Strand 2
D
56 61parallel
Strand 3
D
96 101parallel
Strand 4
D
135 138parallel
Strand 5
D
172 175parallel
Strand 6
D
210 217parallel
Strand 7
D
253 259parallel
Strand 8
D
284 292parallel
Strand 9
D
15 20parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
106 107first strand
Strand 2
D
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 20first strand
Strand 2
B
56 61parallel
Strand 3
B
96 101parallel
Strand 4
B
135 138parallel
Strand 5
B
172 175parallel
Strand 6
B
210 217parallel
Strand 7
B
253 259parallel
Strand 8
B
284 292parallel
Strand 9
B
15 20parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
56 61parallel
Strand 3
A
96 101parallel
Strand 4
A
135 138parallel
Strand 5
A
172 175parallel
Strand 6
A
210 217parallel
Strand 7
A
253 259parallel
Strand 8
A
284 292parallel
Strand 9
A
15 20parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
110 111anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
15 20first strand
Strand 2
C
56 61parallel
Strand 3
C
96 101parallel
Strand 4
C
135 138parallel
Strand 5
C
172 175parallel
Strand 6
C
210 216parallel
Strand 7
C
253 258parallel
Strand 8
C
284 292parallel
Strand 9
C
15 20parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 107first strand
Strand 2
C
110 111anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il