Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZIL entry

There are 2 chains in PDB entry 8ZIL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 65PRO 553
B
 GLY 64THR 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8ZIL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 80Right-handed alpha
Helix 2
AA2
A
93 106Right-handed alpha
Helix 3
AA3
A
125 132Right-handed alpha
Helix 4
AA4
A
159 169Right-handed alpha
Helix 5
AA5
A
170 173Right-handed 310
Helix 6
AA6
A
181 185Right-handed 310
Helix 7
AA7
A
202 204Right-handed 310
Helix 8
AA8
A
205 219Right-handed alpha
Helix 9
AA9
A
231 233Right-handed 310
Helix 10
AB1
A
240 255Right-handed alpha
Helix 11
AB2
A
270 278Right-handed alpha
Helix 12
AB3
A
290 303Right-handed alpha
Helix 13
AB4
A
324 336Right-handed alpha
Helix 14
AB5
A
353 357Right-handed 310
Helix 15
AB6
A
387 398Right-handed alpha
Helix 16
AB7
A
404 415Right-handed alpha
Helix 17
AB8
A
417 438Right-handed alpha
Helix 18
AB9
A
453 459Right-handed alpha
Helix 19
AC1
A
477 488Right-handed alpha
Helix 20
AC2
A
536 552Right-handed alpha
Helix 21
AC3
B
71 80Right-handed alpha
Helix 22
AC4
B
93 108Right-handed alpha
Helix 23
AC5
B
125 132Right-handed alpha
Helix 24
AC6
B
146 155Right-handed alpha
Helix 25
AC7
B
159 169Right-handed alpha
Helix 26
AC8
B
170 173Right-handed 310
Helix 27
AC9
B
181 185Right-handed 310
Helix 28
AD1
B
202 204Right-handed 310
Helix 29
AD2
B
205 219Right-handed alpha
Helix 30
AD3
B
231 233Right-handed 310
Helix 31
AD4
B
240 253Right-handed alpha
Helix 32
AD5
B
270 279Right-handed alpha
Helix 33
AD6
B
290 303Right-handed alpha
Helix 34
AD7
B
324 336Right-handed alpha
Helix 35
AD8
B
353 357Right-handed 310
Helix 36
AD9
B
387 398Right-handed alpha
Helix 37
AE1
B
404 415Right-handed alpha
Helix 38
AE2
B
417 438Right-handed alpha
Helix 39
AE3
B
453 461Right-handed alpha
Helix 40
AE4
B
477 488Right-handed alpha
Helix 41
AE5
B
536 552Right-handed alpha
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There are 6 sheets in PDB entry 8ZIL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
133 140anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
174 177anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 238first strand
Strand 2
A
377 381anti-parallel
Strand 3
A
359 363anti-parallel
Strand 4
A
338 342parallel
Strand 5
A
309 313parallel
Strand 6
A
261 264parallel
Strand 7
A
284 286parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
442 446first strand
Strand 2
A
470 475anti-parallel
Strand 3
A
528 531anti-parallel
Strand 4
A
502 504anti-parallel
Strand 5
A
491 492parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 91first strand
Strand 2
B
133 140anti-parallel
Strand 3
B
114 119anti-parallel
Strand 4
B
174 177anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
235 238first strand
Strand 2
B
377 381anti-parallel
Strand 3
B
359 363anti-parallel
Strand 4
B
338 342parallel
Strand 5
B
309 313parallel
Strand 6
B
260 264parallel
Strand 7
B
282 286parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
442 446first strand
Strand 2
B
470 475anti-parallel
Strand 3
B
528 531anti-parallel
Strand 4
B
502 504anti-parallel
Strand 5
B
491 492parallel
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