Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZIM entry

There is 1 chain in PDB entry 8ZIM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0PHE 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8ZIM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 9Right-handed 310
Helix 2
AA2
A
12 20Right-handed alpha
Helix 3
AA3
A
21 25Right-handed 310
Helix 4
AA4
A
41 58Right-handed alpha
Helix 5
AA5
A
71 94Right-handed alpha
Helix 6
AA6
A
112 122Right-handed alpha
Helix 7
AA7
A
133 147Right-handed alpha
Helix 8
AA8
A
165 171Right-handed alpha
Helix 9
AA9
A
189 194Right-handed alpha
Helix 10
AB1
A
213 217Right-handed alpha
Helix 11
AB2
A
221 235Right-handed alpha
Helix 12
AB3
A
250 264Right-handed alpha
Helix 13
AB4
A
294 299Right-handed alpha
Helix 14
AB5
A
302 306Right-handed 310
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There are 3 sheets in PDB entry 8ZIM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
35 37anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 157first strand
Strand 2
A
125 131parallel
Strand 3
A
101 106parallel
Strand 4
A
177 182parallel
Strand 5
A
241 248parallel
Strand 6
A
279 287anti-parallel
Strand 7
A
268 276anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
218 219parallel
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