Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZIP entry

There are 2 chains in PDB entry 8ZIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
J	THR 7	CYS 376
C	ALA 4	LEU 775

There are 53 helices in PDB entry 8ZIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	J	58	63	Right-handed alpha
Helix 2	AA2	J	80	94	Right-handed alpha
Helix 3	AA3	J	99	103	Right-handed 310
Helix 4	AA4	J	114	129	Right-handed alpha
Helix 5	AA5	J	139	148	Right-handed alpha
Helix 6	AA6	J	174	177	Right-handed 310
Helix 7	AA7	J	183	195	Right-handed alpha
Helix 8	AA8	J	196	199	Right-handed 310
Helix 9	AA9	J	204	219	Right-handed alpha
Helix 10	AB1	J	224	235	Right-handed alpha
Helix 11	AB2	J	254	259	Right-handed alpha
Helix 12	AB3	J	260	264	Right-handed 310
Helix 13	AB4	J	265	270	Right-handed 310
Helix 14	AB5	J	275	286	Right-handed alpha
Helix 15	AB6	J	291	296	Right-handed alpha
Helix 16	AB7	J	303	307	Right-handed 310
Helix 17	AB8	J	310	323	Right-handed alpha
Helix 18	AB9	J	336	338	Right-handed 310
Helix 19	AC1	J	339	351	Right-handed alpha
Helix 20	AC2	J	352	355	Right-handed 310
Helix 21	AC3	J	361	368	Right-handed alpha
Helix 22	AC4	J	370	376	Right-handed alpha
Helix 23	AC5	C	6	11	Right-handed 310
Helix 24	AC6	C	12	17	Right-handed alpha
Helix 25	AC7	C	19	27	Right-handed alpha
Helix 26	AC8	C	81	85	Right-handed 310
Helix 27	AC9	C	89	93	Right-handed 310
Helix 28	AD1	C	97	111	Right-handed alpha
Helix 29	AD2	C	136	141	Right-handed alpha
Helix 30	AD3	C	153	169	Right-handed alpha
Helix 31	AD4	C	183	199	Right-handed alpha
Helix 32	AD5	C	216	232	Right-handed alpha
Helix 33	AD6	C	271	275	Right-handed 310
Helix 34	AD7	C	284	292	Right-handed alpha
Helix 35	AD8	C	295	302	Right-handed alpha
Helix 36	AD9	C	307	311	Right-handed 310
Helix 37	AE1	C	326	340	Right-handed alpha
Helix 38	AE2	C	344	361	Right-handed alpha
Helix 39	AE3	C	379	390	Right-handed alpha
Helix 40	AE4	C	392	402	Right-handed alpha
Helix 41	AE5	C	417	448	Right-handed alpha
Helix 42	AE6	C	473	505	Right-handed alpha
Helix 43	AE7	C	516	521	Right-handed alpha
Helix 44	AE8	C	530	541	Right-handed alpha
Helix 45	AE9	C	545	558	Right-handed alpha
Helix 46	AF1	C	593	599	Right-handed alpha
Helix 47	AF2	C	603	611	Right-handed alpha
Helix 48	AF3	C	615	622	Right-handed alpha
Helix 49	AF4	C	648	666	Right-handed alpha
Helix 50	AF5	C	687	699	Right-handed alpha
Helix 51	AF6	C	699	708	Right-handed alpha
Helix 52	AF7	C	716	724	Right-handed alpha
Helix 53	AF8	C	744	750	Right-handed alpha

There are 13 sheets in PDB entry 8ZIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	31	34	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	10	13	anti-parallel
Strand 4	J	105	109	parallel
Strand 5	J	133	138	parallel
Strand 6	J	359	360	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	55	56	first strand
Strand 2	J	37	40	anti-parallel
Strand 3	J	67	70	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	171	172	first strand
Strand 2	J	162	168	anti-parallel
Strand 3	J	178	180	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	171	172	first strand
Strand 2	J	162	168	anti-parallel
Strand 3	J	152	157	anti-parallel
Strand 4	J	299	302	parallel
Strand 5	J	331	332	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	240	244	first strand
Strand 2	J	247	252	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	49	first strand
Strand 2	C	37	39	anti-parallel
Strand 3	C	77	78	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	68	70	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	118	first strand
Strand 2	C	121	125	anti-parallel
Strand 3	C	668	675	parallel
Strand 4	C	172	177	parallel
Strand 5	C	456	463	parallel
Strand 6	C	245	253	anti-parallel
Strand 7	C	259	269	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	242	243	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	367	first strand
Strand 2	C	374	376	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	404	407	first strand
Strand 2	C	410	413	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	564	565	first strand
Strand 2	C	578	582	anti-parallel
Strand 3	C	585	589	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	713	715	first strand
Strand 2	C	765	767	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIP