Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZIV entry

There are 3 chains in PDB entry 8ZIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 785	HIS 1019
A	ILE 182	LYS 784
C	ALA 16	SER 247

There are 13 helices in PDB entry 8ZIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	823	828	Right-handed alpha
Helix 2	AA2	D	833	835	Right-handed 310
Helix 3	AA3	D	937	945	Right-handed alpha
Helix 4	AA4	D	1010	1019	Right-handed alpha
Helix 5	AA5	A	201	203	Right-handed 310
Helix 6	AA6	A	213	217	Right-handed 310
Helix 7	AA7	A	286	290	Right-handed 310
Helix 8	AA8	A	340	346	Right-handed alpha
Helix 9	AA9	A	671	675	Right-handed 310
Helix 10	AB1	A	708	720	Right-handed alpha
Helix 11	AB2	C	61	65	Right-handed 310
Helix 12	AB3	C	167	175	Right-handed alpha
Helix 13	AB4	C	235	246	Right-handed alpha

There are 18 sheets in PDB entry 8ZIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	804	first strand
Strand 2	D	807	814	anti-parallel
Strand 3	D	819	822	anti-parallel
Strand 4	D	878	882	anti-parallel
Strand 5	D	855	864	anti-parallel
Strand 6	D	837	841	anti-parallel
Strand 7	D	799	804	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	909	914	first strand
Strand 2	D	929	936	anti-parallel
Strand 3	D	954	957	anti-parallel
Strand 4	D	1002	1006	anti-parallel
Strand 5	D	982	992	anti-parallel
Strand 6	D	974	979	anti-parallel
Strand 7	D	909	914	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	197	199	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	253	258	parallel
Strand 3	A	310	317	anti-parallel
Strand 4	A	278	279	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	253	258	parallel
Strand 3	A	310	317	anti-parallel
Strand 4	A	283	284	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	306	first strand
Strand 2	A	264	268	anti-parallel
Strand 3	A	330	334	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	405	410	anti-parallel
Strand 3	A	478	483	anti-parallel
Strand 4	A	436	438	anti-parallel
Strand 5	A	453	454	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	392	395	anti-parallel
Strand 3	A	490	499	anti-parallel
Strand 4	A	421	429	anti-parallel
Strand 5	A	463	468	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	475	476	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	551	557	parallel
Strand 3	A	611	617	anti-parallel
Strand 4	A	579	584	anti-parallel
Strand 5	A	591	596	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	565	first strand
Strand 2	A	632	634	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	570	572	first strand
Strand 2	A	626	628	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	649	first strand
Strand 2	A	655	656	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	688	690	first strand
Strand 2	A	764	766	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	694	first strand
Strand 2	A	699	700	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	A	739	742	parallel
Strand 3	A	750	752	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	57	60	anti-parallel
Strand 4	C	109	113	anti-parallel
Strand 5	C	86	95	anti-parallel
Strand 6	C	70	73	anti-parallel
Strand 7	C	38	42	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	203	206	anti-parallel
Strand 4	C	209	216	anti-parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	183	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIV