Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZIW entry

There are 2 chains in PDB entry 8ZIW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 501	LYS 784
D	ILE 785	HIS 1019

There are 5 helices in PDB entry 8ZIW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	708	719	Right-handed alpha
Helix 2	AA2	D	833	835	Right-handed 310
Helix 3	AA3	D	937	945	Right-handed alpha
Helix 4	AA4	D	950	952	Right-handed 310
Helix 5	AA5	D	1010	1017	Right-handed alpha

There are 8 sheets in PDB entry 8ZIW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	538	first strand
Strand 2	A	626	630	anti-parallel
Strand 3	A	567	572	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	552	557	first strand
Strand 2	A	611	616	anti-parallel
Strand 3	A	580	583	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	649	first strand
Strand 2	A	655	656	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	681	first strand
Strand 2	A	688	694	anti-parallel
Strand 3	A	699	700	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	681	first strand
Strand 2	A	688	694	anti-parallel
Strand 3	A	764	767	anti-parallel
Strand 4	A	724	725	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	750	753	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	789	790	first strand
Strand 2	D	929	936	anti-parallel
Strand 3	D	954	957	anti-parallel
Strand 4	D	1002	1006	anti-parallel
Strand 5	D	984	992	anti-parallel
Strand 6	D	974	977	anti-parallel
Strand 7	D	909	914	anti-parallel
Strand 8	D	929	936	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	804	first strand
Strand 2	D	807	814	anti-parallel
Strand 3	D	819	822	anti-parallel
Strand 4	D	878	882	anti-parallel
Strand 5	D	855	864	anti-parallel
Strand 6	D	837	841	anti-parallel
Strand 7	D	799	804	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZIW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIW