Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZIY entry

There are 3 chains in PDB entry 8ZIY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ALA 16	SER 247
D	ILE 785	HIS 1019
A	ILE 182	LYS 784

There are 12 helices in PDB entry 8ZIY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	61	65	Right-handed 310
Helix 2	AA2	C	167	175	Right-handed alpha
Helix 3	AA3	C	232	234	Right-handed 310
Helix 4	AA4	C	235	247	Right-handed alpha
Helix 5	AA5	D	937	945	Right-handed alpha
Helix 6	AA6	D	1007	1009	Right-handed 310
Helix 7	AA7	D	1010	1015	Right-handed alpha
Helix 8	AA8	A	201	203	Right-handed 310
Helix 9	AA9	A	213	217	Right-handed 310
Helix 10	AB1	A	340	346	Right-handed alpha
Helix 11	AB2	A	671	675	Right-handed 310
Helix 12	AB3	A	708	720	Right-handed alpha

There are 17 sheets in PDB entry 8ZIY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	46	54	anti-parallel
Strand 3	C	57	60	anti-parallel
Strand 4	C	109	113	anti-parallel
Strand 5	C	86	95	anti-parallel
Strand 6	C	70	73	anti-parallel
Strand 7	C	39	42	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	163	first strand
Strand 2	C	139	143	anti-parallel
Strand 3	C	204	206	anti-parallel
Strand 4	C	209	212	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	184	first strand
Strand 2	C	229	230	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	789	790	first strand
Strand 2	D	929	936	anti-parallel
Strand 3	D	954	957	anti-parallel
Strand 4	D	1002	1005	anti-parallel
Strand 5	D	984	989	anti-parallel
Strand 6	D	974	977	anti-parallel
Strand 7	D	909	914	anti-parallel
Strand 8	D	929	936	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	855	858	first strand
Strand 2	D	837	841	anti-parallel
Strand 3	D	799	804	anti-parallel
Strand 4	D	807	814	anti-parallel
Strand 5	D	819	823	anti-parallel
Strand 6	D	877	881	anti-parallel
Strand 7	D	861	864	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	197	199	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	253	258	parallel
Strand 3	A	310	316	anti-parallel
Strand 4	A	279	284	anti-parallel
Strand 5	A	295	296	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	239	first strand
Strand 2	A	328	335	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	304	306	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	405	410	anti-parallel
Strand 3	A	475	483	anti-parallel
Strand 4	A	436	443	anti-parallel
Strand 5	A	449	454	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	392	395	anti-parallel
Strand 3	A	490	499	anti-parallel
Strand 4	A	421	429	anti-parallel
Strand 5	A	462	469	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	556	557	first strand
Strand 2	A	611	617	anti-parallel
Strand 3	A	579	583	anti-parallel
Strand 4	A	592	596	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	566	first strand
Strand 2	A	605	606	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	568	572	first strand
Strand 2	A	626	629	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	649	first strand
Strand 2	A	655	656	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	681	first strand
Strand 2	A	690	694	anti-parallel
Strand 3	A	699	700	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	729	first strand
Strand 2	A	763	764	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	742	first strand
Strand 2	A	750	752	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZIY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIY