Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZIZ entry

There are 2 chains in PDB entry 8ZIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 509	LYS 784
D	ILE 785	HIS 1019

There are 5 helices in PDB entry 8ZIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	703	707	Right-handed 310
Helix 2	AA2	A	708	719	Right-handed alpha
Helix 3	AA3	D	833	835	Right-handed 310
Helix 4	AA4	D	937	945	Right-handed alpha
Helix 5	AA5	D	1010	1017	Right-handed alpha

There are 8 sheets in PDB entry 8ZIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	529	530	first strand
Strand 2	A	551	557	parallel
Strand 3	A	611	617	anti-parallel
Strand 4	A	579	583	anti-parallel
Strand 5	A	595	596	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	607	first strand
Strand 2	A	563	572	anti-parallel
Strand 3	A	626	634	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	648	649	first strand
Strand 2	A	655	656	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	688	694	anti-parallel
Strand 3	A	699	700	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	688	694	anti-parallel
Strand 3	A	764	766	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	750	753	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	789	790	first strand
Strand 2	D	929	933	anti-parallel
Strand 3	D	910	914	anti-parallel
Strand 4	D	974	978	anti-parallel
Strand 5	D	983	989	anti-parallel
Strand 6	D	1004	1006	anti-parallel
Strand 7	D	954	957	anti-parallel
Strand 8	D	935	936	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	804	first strand
Strand 2	D	807	816	anti-parallel
Strand 3	D	819	823	anti-parallel
Strand 4	D	877	882	anti-parallel
Strand 5	D	855	864	anti-parallel
Strand 6	D	837	841	anti-parallel
Strand 7	D	799	804	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZIZ