Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJ4 entry

There are 3 chains in PDB entry 8ZJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	ILE 785	HIS 1019
C	ALA 16	SER 247
A	ILE 182	LYS 784

There are 13 helices in PDB entry 8ZJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	825	828	Right-handed 310
Helix 2	AA2	D	833	835	Right-handed 310
Helix 3	AA3	D	937	945	Right-handed alpha
Helix 4	AA4	D	1010	1019	Right-handed alpha
Helix 5	AA5	C	29	33	Right-handed 310
Helix 6	AA6	C	62	65	Right-handed 310
Helix 7	AA7	C	167	175	Right-handed alpha
Helix 8	AA8	C	235	246	Right-handed alpha
Helix 9	AA9	A	201	203	Right-handed 310
Helix 10	AB1	A	213	217	Right-handed 310
Helix 11	AB2	A	340	346	Right-handed alpha
Helix 12	AB3	A	671	675	Right-handed 310
Helix 13	AB4	A	708	719	Right-handed alpha

There are 14 sheets in PDB entry 8ZJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	789	790	first strand
Strand 2	D	929	936	anti-parallel
Strand 3	D	954	957	anti-parallel
Strand 4	D	1002	1006	anti-parallel
Strand 5	D	985	988	anti-parallel
Strand 6	D	972	976	anti-parallel
Strand 7	D	909	914	anti-parallel
Strand 8	D	929	936	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	799	804	first strand
Strand 2	D	808	814	anti-parallel
Strand 3	D	819	823	anti-parallel
Strand 4	D	877	882	anti-parallel
Strand 5	D	855	864	anti-parallel
Strand 6	D	837	841	anti-parallel
Strand 7	D	799	804	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	46	52	anti-parallel
Strand 3	C	57	60	anti-parallel
Strand 4	C	109	113	anti-parallel
Strand 5	C	86	95	anti-parallel
Strand 6	C	70	73	anti-parallel
Strand 7	C	38	42	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	164	first strand
Strand 2	C	138	143	anti-parallel
Strand 3	C	203	206	anti-parallel
Strand 4	C	209	216	anti-parallel
Strand 5	C	228	231	anti-parallel
Strand 6	C	183	184	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	190	first strand
Strand 2	A	197	199	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	253	258	parallel
Strand 3	A	310	317	anti-parallel
Strand 4	A	278	284	anti-parallel
Strand 5	A	295	296	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	328	335	anti-parallel
Strand 3	A	263	269	anti-parallel
Strand 4	A	303	306	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	405	410	anti-parallel
Strand 3	A	475	483	anti-parallel
Strand 4	A	437	443	anti-parallel
Strand 5	A	452	454	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	392	395	anti-parallel
Strand 3	A	490	499	anti-parallel
Strand 4	A	421	429	anti-parallel
Strand 5	A	463	469	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	538	first strand
Strand 2	A	627	629	anti-parallel
Strand 3	A	568	571	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	551	557	first strand
Strand 2	A	611	617	anti-parallel
Strand 3	A	579	584	anti-parallel
Strand 4	A	591	596	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	605	606	first strand
Strand 2	A	563	566	anti-parallel
Strand 3	A	632	634	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	681	first strand
Strand 2	A	690	694	anti-parallel
Strand 3	A	699	701	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	742	first strand
Strand 2	A	750	752	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJ4