Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJB entry

There are 6 chains in PDB entry 8ZJB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	LYS 245
B	GLY 4	LYS 245
C	GLY 4	LYS 245
D	VAL 5	LYS 245
E	SER 38	LYS 245
F	VAL 41	LYS 245

There are 47 helices in PDB entry 8ZJB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	21	Right-handed alpha
Helix 2	AA2	A	27	34	Right-handed alpha
Helix 3	AA3	A	34	46	Right-handed alpha
Helix 4	AA4	A	53	75	Right-handed alpha
Helix 5	AA5	A	90	94	Right-handed 310
Helix 6	AA6	A	157	170	Right-handed alpha
Helix 7	AA7	A	215	225	Right-handed alpha
Helix 8	AA8	A	228	245	Right-handed alpha
Helix 9	AA9	B	7	22	Right-handed alpha
Helix 10	AB1	B	27	34	Right-handed alpha
Helix 11	AB2	B	34	46	Right-handed alpha
Helix 12	AB3	B	53	75	Right-handed alpha
Helix 13	AB4	B	90	94	Right-handed 310
Helix 14	AB5	B	95	100	Right-handed alpha
Helix 15	AB6	B	125	129	Right-handed 310
Helix 16	AB7	B	157	171	Right-handed alpha
Helix 17	AB8	B	215	225	Right-handed alpha
Helix 18	AB9	B	228	245	Right-handed alpha
Helix 19	AC1	C	7	20	Right-handed alpha
Helix 20	AC2	C	27	34	Right-handed alpha
Helix 21	AC3	C	34	47	Right-handed alpha
Helix 22	AC4	C	53	75	Right-handed alpha
Helix 23	AC5	C	90	94	Right-handed 310
Helix 24	AC6	C	157	169	Right-handed alpha
Helix 25	AC7	C	215	226	Right-handed alpha
Helix 26	AC8	C	228	245	Right-handed alpha
Helix 27	AC9	D	7	21	Right-handed alpha
Helix 28	AD1	D	27	34	Right-handed alpha
Helix 29	AD2	D	34	45	Right-handed alpha
Helix 30	AD3	D	46	48	Right-handed 310
Helix 31	AD4	D	53	75	Right-handed alpha
Helix 32	AD5	D	90	94	Right-handed 310
Helix 33	AD6	D	125	129	Right-handed 310
Helix 34	AD7	D	157	171	Right-handed alpha
Helix 35	AD8	D	215	226	Right-handed alpha
Helix 36	AD9	D	228	245	Right-handed alpha
Helix 37	AE1	E	39	45	Right-handed alpha
Helix 38	AE2	E	58	71	Right-handed alpha
Helix 39	AE3	E	157	171	Right-handed alpha
Helix 40	AE4	E	215	225	Right-handed alpha
Helix 41	AE5	E	228	244	Right-handed alpha
Helix 42	AE6	F	43	48	Right-handed alpha
Helix 43	AE7	F	53	71	Right-handed alpha
Helix 44	AE8	F	125	129	Right-handed 310
Helix 45	AE9	F	157	168	Right-handed alpha
Helix 46	AF1	F	215	226	Right-handed alpha
Helix 47	AF2	F	228	245	Right-handed alpha

There are 13 sheets in PDB entry 8ZJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	116	123	anti-parallel
Strand 3	A	188	200	parallel
Strand 4	A	172	185	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	146	first strand
Strand 2	A	132	136	anti-parallel
Strand 3	A	211	214	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	116	123	anti-parallel
Strand 3	B	188	200	parallel
Strand 4	B	172	185	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	146	first strand
Strand 2	B	132	136	anti-parallel
Strand 3	B	211	214	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	142	143	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	117	123	anti-parallel
Strand 3	C	188	200	parallel
Strand 4	C	172	185	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	146	first strand
Strand 2	C	132	136	anti-parallel
Strand 3	C	211	214	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	151	first strand
Strand 2	D	116	123	anti-parallel
Strand 3	D	188	200	parallel
Strand 4	D	172	185	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	146	first strand
Strand 2	D	132	136	anti-parallel
Strand 3	D	211	214	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	117	123	anti-parallel
Strand 3	E	188	199	parallel
Strand 4	E	173	185	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	133	135	first strand
Strand 2	E	211	213	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	123	first strand
Strand 2	F	189	199	parallel
Strand 3	F	173	184	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	132	134	first strand
Strand 2	F	212	214	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJB