Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJD entry

There are 6 chains in PDB entry 8ZJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	ALA 42	VAL 337
L	TYR 211	ALA 221
B	GLU 8	ASN 345
S	VAL 1	LEU 247
G	THR 5	ASN 58
A	THR 4	VAL 361

There are 34 helices in PDB entry 8ZJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	43	69	Right-handed alpha
Helix 2	AA2	R	75	94	Right-handed alpha
Helix 3	AA3	R	95	103	Right-handed alpha
Helix 4	AA4	R	111	146	Right-handed alpha
Helix 5	AA5	R	148	152	Right-handed 310
Helix 6	AA6	R	155	174	Right-handed alpha
Helix 7	AA7	R	175	180	Right-handed alpha
Helix 8	AA8	R	197	213	Right-handed alpha
Helix 9	AA9	R	213	234	Right-handed alpha
Helix 10	AB1	R	244	289	Right-handed alpha
Helix 11	AB2	R	298	324	Right-handed alpha
Helix 12	AB3	R	327	337	Right-handed alpha
Helix 13	AB4	L	212	216	Right-handed 310
Helix 14	AB5	B	10	31	Right-handed alpha
Helix 15	AB6	B	34	39	Right-handed alpha
Helix 16	AB7	B	271	275	Right-handed 310
Helix 17	AB8	S	27	31	Right-handed 310
Helix 18	AB9	S	52	55	Right-handed 310
Helix 19	AC1	S	61	64	Right-handed 310
Helix 20	AC2	S	73	75	Right-handed 310
Helix 21	AC3	S	86	90	Right-handed 310
Helix 22	AC4	S	220	224	Right-handed 310
Helix 23	AC5	G	6	23	Right-handed alpha
Helix 24	AC6	G	28	43	Right-handed alpha
Helix 25	AC7	G	44	47	Right-handed 310
Helix 26	AC8	A	6	31	Right-handed alpha
Helix 27	AC9	A	45	57	Right-handed alpha
Helix 28	AD1	A	214	223	Right-handed 310
Helix 29	AD2	A	235	237	Right-handed 310
Helix 30	AD3	A	248	262	Right-handed alpha
Helix 31	AD4	A	277	285	Right-handed alpha
Helix 32	AD5	A	289	293	Right-handed 310
Helix 33	AD6	A	303	317	Right-handed alpha
Helix 34	AD7	A	337	358	Right-handed alpha

There are 13 sheets in PDB entry 8ZJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	181	184	first strand
Strand 2	R	190	193	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	74	79	anti-parallel
Strand 3	B	83	88	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	180	186	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	222	228	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	239	first strand
Strand 2	B	245	250	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	283	first strand
Strand 2	B	289	292	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	313	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	5	first strand
Strand 2	S	15	24	anti-parallel
Strand 3	S	77	85	anti-parallel
Strand 4	S	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	9	11	first strand
Strand 2	S	114	118	parallel
Strand 3	S	91	98	anti-parallel
Strand 4	S	32	38	anti-parallel
Strand 5	S	44	50	anti-parallel
Strand 6	S	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	141	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	207	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	190	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	33	40	parallel
Strand 4	A	227	233	parallel
Strand 5	A	270	276	parallel
Strand 6	A	326	330	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJD