Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJE entry

There are 8 chains in PDB entry 8ZJE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 4	VAL 361
B	GLU 8	ASN 345
G	THR 5	ASN 58
R	ALA 42	ARG 336
S	VAL 1	LEU 247
C	ASN 4	PHE 6
C	LEU 8	LEU 8
C	TRP 10	TRP 10

There are 32 helices in PDB entry 8ZJE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	27	Right-handed alpha
Helix 2	AA2	A	45	58	Right-handed alpha
Helix 3	AA3	A	218	223	Right-handed 310
Helix 4	AA4	A	235	237	Right-handed 310
Helix 5	AA5	A	248	262	Right-handed alpha
Helix 6	AA6	A	263	267	Right-handed 310
Helix 7	AA7	A	277	286	Right-handed alpha
Helix 8	AA8	A	289	293	Right-handed 310
Helix 9	AA9	A	303	317	Right-handed alpha
Helix 10	AB1	A	337	358	Right-handed alpha
Helix 11	AB2	B	10	31	Right-handed alpha
Helix 12	AB3	B	34	39	Right-handed alpha
Helix 13	AB4	G	6	24	Right-handed alpha
Helix 14	AB5	G	28	44	Right-handed alpha
Helix 15	AB6	G	45	47	Right-handed 310
Helix 16	AB7	G	54	58	Right-handed 310
Helix 17	AB8	R	43	68	Right-handed alpha
Helix 18	AB9	R	75	95	Right-handed alpha
Helix 19	AC1	R	97	103	Right-handed alpha
Helix 20	AC2	R	111	146	Right-handed alpha
Helix 21	AC3	R	155	174	Right-handed alpha
Helix 22	AC4	R	175	180	Right-handed alpha
Helix 23	AC5	R	197	213	Right-handed alpha
Helix 24	AC6	R	213	234	Right-handed alpha
Helix 25	AC7	R	242	253	Right-handed alpha
Helix 26	AC8	R	253	289	Right-handed alpha
Helix 27	AC9	R	298	324	Right-handed alpha
Helix 28	AD1	R	327	336	Right-handed alpha
Helix 29	AD2	S	27	31	Right-handed 310
Helix 30	AD3	S	52	55	Right-handed 310
Helix 31	AD4	S	86	90	Right-handed 310
Helix 32	AD5	S	220	224	Right-handed 310

There are 13 sheets in PDB entry 8ZJE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	197	first strand
Strand 2	A	202	207	anti-parallel
Strand 3	A	33	38	parallel
Strand 4	A	227	233	parallel
Strand 5	A	270	276	parallel
Strand 6	A	326	330	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	57	first strand
Strand 2	B	340	344	anti-parallel
Strand 3	B	332	336	anti-parallel
Strand 4	B	320	325	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	75	79	anti-parallel
Strand 3	B	83	87	anti-parallel
Strand 4	B	94	99	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	110	first strand
Strand 2	B	116	121	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	139	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	156	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	171	175	anti-parallel
Strand 4	B	180	185	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	197	first strand
Strand 2	B	203	208	anti-parallel
Strand 3	B	212	217	anti-parallel
Strand 4	B	223	228	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	245	249	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	264	269	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	283	first strand
Strand 2	B	289	294	anti-parallel
Strand 3	B	299	303	anti-parallel
Strand 4	B	309	312	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	181	183	first strand
Strand 2	R	191	193	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	2	5	first strand
Strand 2	S	16	24	anti-parallel
Strand 3	S	77	83	anti-parallel
Strand 4	S	67	72	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	9	11	first strand
Strand 2	S	114	118	parallel
Strand 3	S	91	98	anti-parallel
Strand 4	S	32	38	anti-parallel
Strand 5	S	44	50	anti-parallel
Strand 6	S	57	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	140	142	first strand
Strand 2	S	155	161	anti-parallel
Strand 3	S	211	216	anti-parallel
Strand 4	S	203	207	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	146	148	first strand
Strand 2	S	243	246	parallel
Strand 3	S	226	231	anti-parallel
Strand 4	S	174	179	anti-parallel
Strand 5	S	186	189	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJE