Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJF entry

There are 2 chains in PDB entry 8ZJF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 44	CYS 559
A	PHE 19	GLY 964

There are 33 helices in PDB entry 8ZJF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	50	58	Right-handed alpha
Helix 2	AA2	B	83	88	Right-handed alpha
Helix 3	AA3	B	164	172	Right-handed alpha
Helix 4	AA4	B	174	183	Right-handed alpha
Helix 5	AA5	B	208	214	Right-handed alpha
Helix 6	AA6	B	238	249	Right-handed alpha
Helix 7	AA7	B	260	271	Right-handed alpha
Helix 8	AA8	B	271	276	Right-handed alpha
Helix 9	AA9	B	294	302	Right-handed 310
Helix 10	AB1	B	319	323	Right-handed 310
Helix 11	AB2	B	329	340	Right-handed alpha
Helix 12	AB3	B	352	362	Right-handed alpha
Helix 13	AB4	B	377	391	Right-handed alpha
Helix 14	AB5	B	515	520	Right-handed alpha
Helix 15	AB6	B	521	526	Right-handed alpha
Helix 16	AB7	A	143	147	Right-handed 310
Helix 17	AB8	A	214	236	Right-handed alpha
Helix 18	AB9	A	257	260	Right-handed 310
Helix 19	AC1	A	261	271	Right-handed alpha
Helix 20	AC2	A	280	292	Right-handed alpha
Helix 21	AC3	A	294	298	Right-handed 310
Helix 22	AC4	A	321	327	Right-handed alpha
Helix 23	AC5	A	328	332	Right-handed 310
Helix 24	AC6	A	342	348	Right-handed alpha
Helix 25	AC7	A	349	358	Right-handed alpha
Helix 26	AC8	A	371	373	Right-handed 310
Helix 27	AC9	A	374	385	Right-handed alpha
Helix 28	AD1	A	422	427	Right-handed alpha
Helix 29	AD2	A	450	456	Right-handed alpha
Helix 30	AD3	A	482	486	Right-handed 310
Helix 31	AD4	A	606	610	Right-handed 310
Helix 32	AD5	A	636	638	Right-handed 310
Helix 33	AD6	A	744	748	Right-handed 310

There are 24 sheets in PDB entry 8ZJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	107	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	465	472	parallel
Strand 4	B	453	459	anti-parallel
Strand 5	B	395	396	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	436	445	anti-parallel
Strand 4	B	404	407	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	124	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	436	445	anti-parallel
Strand 4	B	410	411	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	236	first strand
Strand 2	B	189	196	anti-parallel
Strand 3	B	152	159	parallel
Strand 4	B	281	288	parallel
Strand 5	B	342	348	parallel
Strand 6	B	367	370	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	544	first strand
Strand 2	B	547	548	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	28	first strand
Strand 2	A	671	676	anti-parallel
Strand 3	A	662	666	anti-parallel
Strand 4	A	648	653	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	55	56	anti-parallel
Strand 3	A	67	72	anti-parallel
Strand 4	A	77	81	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	44	first strand
Strand 2	A	51	52	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	95	100	first strand
Strand 2	A	103	113	anti-parallel
Strand 3	A	120	129	anti-parallel
Strand 4	A	135	140	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	252	first strand
Strand 2	A	239	246	anti-parallel
Strand 3	A	201	208	parallel
Strand 4	A	304	310	parallel
Strand 5	A	335	339	parallel
Strand 6	A	366	367	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	410	first strand
Strand 2	A	415	420	anti-parallel
Strand 3	A	430	434	anti-parallel
Strand 4	A	439	443	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	469	first strand
Strand 2	A	474	480	anti-parallel
Strand 3	A	488	495	anti-parallel
Strand 4	A	498	506	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	521	first strand
Strand 2	A	531	536	anti-parallel
Strand 3	A	544	553	anti-parallel
Strand 4	A	560	566	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	521	first strand
Strand 2	A	531	536	anti-parallel
Strand 3	A	544	553	anti-parallel
Strand 4	A	574	577	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	580	583	first strand
Strand 2	A	595	599	anti-parallel
Strand 3	A	614	618	anti-parallel
Strand 4	A	631	634	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	A	804	805	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	683	first strand
Strand 2	A	706	709	anti-parallel
Strand 3	A	760	762	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	701	703	first strand
Strand 2	A	765	768	anti-parallel
Strand 3	A	741	742	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	754	first strand
Strand 2	A	724	727	anti-parallel
Strand 3	A	791	792	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	729	731	first strand
Strand 2	A	783	787	anti-parallel
Strand 3	A	815	817	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	833	835	first strand
Strand 2	A	858	860	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	838	839	first strand
Strand 2	A	852	856	anti-parallel
Strand 3	A	921	927	anti-parallel
Strand 4	A	878	884	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	869	first strand
Strand 2	A	940	945	anti-parallel
Strand 3	A	872	873	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	869	first strand
Strand 2	A	940	945	anti-parallel
Strand 3	A	953	955	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJF