Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJJ entry

There are 6 chains in PDB entry 8ZJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 530	ASN 727
B	MET 1	LEU 1642
C	MET 1	LEU 177
D	SER 530	ASN 727
E	MET 1	LEU 1642
F	MET 1	LEU 177

There are166 helices in PDB entry 8ZJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	530	540	Right-handed alpha
Helix 2	AA2	A	541	559	Right-handed alpha
Helix 3	AA3	A	620	622	Right-handed 310
Helix 4	AA4	A	634	639	Right-handed 310
Helix 5	AA5	A	658	673	Right-handed alpha
Helix 6	AA6	A	679	698	Right-handed alpha
Helix 7	AA7	B	84	107	Right-handed alpha
Helix 8	AA8	B	110	133	Right-handed alpha
Helix 9	AA9	B	137	159	Right-handed alpha
Helix 10	AB1	B	168	172	Right-handed 310
Helix 11	AB2	B	173	177	Right-handed 310
Helix 12	AB3	B	180	205	Right-handed alpha
Helix 13	AB4	B	209	218	Right-handed alpha
Helix 14	AB5	B	273	276	Right-handed 310
Helix 15	AB6	B	285	290	Right-handed alpha
Helix 16	AB7	B	329	334	Right-handed alpha
Helix 17	AB8	B	357	361	Right-handed 310
Helix 18	AB9	B	378	389	Right-handed alpha
Helix 19	AC1	B	409	417	Right-handed alpha
Helix 20	AC2	B	521	523	Right-handed 310
Helix 21	AC3	B	537	544	Right-handed alpha
Helix 22	AC4	B	575	580	Right-handed alpha
Helix 23	AC5	B	591	605	Right-handed alpha
Helix 24	AC6	B	634	642	Right-handed alpha
Helix 25	AC7	B	646	648	Right-handed 310
Helix 26	AC8	B	649	658	Right-handed alpha
Helix 27	AC9	B	661	666	Right-handed alpha
Helix 28	AD1	B	668	684	Right-handed alpha
Helix 29	AD2	B	686	705	Right-handed alpha
Helix 30	AD3	B	709	711	Right-handed 310
Helix 31	AD4	B	712	722	Right-handed alpha
Helix 32	AD5	B	728	743	Right-handed alpha
Helix 33	AD6	B	746	759	Right-handed alpha
Helix 34	AD7	B	759	779	Right-handed alpha
Helix 35	AD8	B	783	804	Right-handed alpha
Helix 36	AD9	B	806	808	Right-handed 310
Helix 37	AE1	B	809	830	Right-handed alpha
Helix 38	AE2	B	832	846	Right-handed alpha
Helix 39	AE3	B	852	865	Right-handed alpha
Helix 40	AE4	B	874	889	Right-handed alpha
Helix 41	AE5	B	898	915	Right-handed alpha
Helix 42	AE6	B	921	943	Right-handed alpha
Helix 43	AE7	B	949	964	Right-handed alpha
Helix 44	AE8	B	965	972	Right-handed alpha
Helix 45	AE9	B	978	998	Right-handed alpha
Helix 46	AF1	B	1006	1033	Right-handed alpha
Helix 47	AF2	B	1042	1054	Right-handed alpha
Helix 48	AF3	B	1058	1064	Right-handed alpha
Helix 49	AF4	B	1065	1076	Right-handed alpha
Helix 50	AF5	B	1078	1095	Right-handed alpha
Helix 51	AF6	B	1096	1100	Right-handed 310
Helix 52	AF7	B	1101	1106	Right-handed alpha
Helix 53	AF8	B	1106	1114	Right-handed alpha
Helix 54	AF9	B	1118	1125	Right-handed alpha
Helix 55	AG1	B	1125	1139	Right-handed alpha
Helix 56	AG2	B	1144	1161	Right-handed alpha
Helix 57	AG3	B	1165	1183	Right-handed alpha
Helix 58	AG4	B	1184	1215	Right-handed alpha
Helix 59	AG5	B	1216	1235	Right-handed alpha
Helix 60	AG6	B	1236	1255	Right-handed alpha
Helix 61	AG7	B	1256	1271	Right-handed alpha
Helix 62	AG8	B	1292	1311	Right-handed alpha
Helix 63	AG9	B	1313	1331	Right-handed alpha
Helix 64	AH1	B	1334	1355	Right-handed alpha
Helix 65	AH2	B	1390	1401	Right-handed alpha
Helix 66	AH3	B	1416	1420	Right-handed 310
Helix 67	AH4	B	1447	1457	Right-handed alpha
Helix 68	AH5	B	1513	1539	Right-handed alpha
Helix 69	AH6	B	1544	1556	Right-handed alpha
Helix 70	AH7	B	1561	1570	Right-handed alpha
Helix 71	AH8	B	1574	1579	Right-handed alpha
Helix 72	AH9	B	1580	1584	Right-handed 310
Helix 73	AI1	B	1585	1611	Right-handed alpha
Helix 74	AI2	B	1614	1635	Right-handed alpha
Helix 75	AI3	C	15	26	Right-handed alpha
Helix 76	AI4	C	61	66	Right-handed 310
Helix 77	AI5	C	67	72	Right-handed 310
Helix 78	AI6	C	86	96	Right-handed alpha
Helix 79	AI7	C	96	105	Right-handed alpha
Helix 80	AI8	C	116	121	Right-handed alpha
Helix 81	AI9	C	122	132	Right-handed alpha
Helix 82	AJ1	C	138	150	Right-handed alpha
Helix 83	AJ2	C	164	177	Right-handed alpha
Helix 84	AJ3	D	531	540	Right-handed alpha
Helix 85	AJ4	D	541	559	Right-handed alpha
Helix 86	AJ5	D	620	622	Right-handed 310
Helix 87	AJ6	D	634	639	Right-handed 310
Helix 88	AJ7	D	658	673	Right-handed alpha
Helix 89	AJ8	D	679	698	Right-handed alpha
Helix 90	AJ9	E	84	107	Right-handed alpha
Helix 91	AK1	E	110	133	Right-handed alpha
Helix 92	AK2	E	137	159	Right-handed alpha
Helix 93	AK3	E	168	172	Right-handed 310
Helix 94	AK4	E	173	177	Right-handed 310
Helix 95	AK5	E	180	205	Right-handed alpha
Helix 96	AK6	E	209	218	Right-handed alpha
Helix 97	AK7	E	273	276	Right-handed 310
Helix 98	AK8	E	285	290	Right-handed alpha
Helix 99	AK9	E	329	334	Right-handed alpha
Helix 100	AL1	E	357	361	Right-handed 310
Helix 101	AL2	E	378	389	Right-handed alpha
Helix 102	AL3	E	409	417	Right-handed alpha
Helix 103	AL4	E	521	523	Right-handed 310
Helix 104	AL5	E	537	544	Right-handed alpha
Helix 105	AL6	E	575	580	Right-handed alpha
Helix 106	AL7	E	591	605	Right-handed alpha
Helix 107	AL8	E	634	642	Right-handed alpha
Helix 108	AL9	E	646	648	Right-handed 310
Helix 109	AM1	E	649	658	Right-handed alpha
Helix 110	AM2	E	661	666	Right-handed alpha
Helix 111	AM3	E	668	684	Right-handed alpha
Helix 112	AM4	E	686	705	Right-handed alpha
Helix 113	AM5	E	709	711	Right-handed 310
Helix 114	AM6	E	712	722	Right-handed alpha
Helix 115	AM7	E	728	743	Right-handed alpha
Helix 116	AM8	E	746	759	Right-handed alpha
Helix 117	AM9	E	759	779	Right-handed alpha
Helix 118	AN1	E	783	804	Right-handed alpha
Helix 119	AN2	E	806	808	Right-handed 310
Helix 120	AN3	E	809	830	Right-handed alpha
Helix 121	AN4	E	832	846	Right-handed alpha
Helix 122	AN5	E	852	865	Right-handed alpha
Helix 123	AN6	E	874	889	Right-handed alpha
Helix 124	AN7	E	898	915	Right-handed alpha
Helix 125	AN8	E	921	943	Right-handed alpha
Helix 126	AN9	E	949	964	Right-handed alpha
Helix 127	AO1	E	965	972	Right-handed alpha
Helix 128	AO2	E	978	998	Right-handed alpha
Helix 129	AO3	E	1006	1033	Right-handed alpha
Helix 130	AO4	E	1042	1054	Right-handed alpha
Helix 131	AO5	E	1058	1064	Right-handed alpha
Helix 132	AO6	E	1065	1076	Right-handed alpha
Helix 133	AO7	E	1078	1095	Right-handed alpha
Helix 134	AO8	E	1096	1100	Right-handed 310
Helix 135	AO9	E	1101	1106	Right-handed alpha
Helix 136	AP1	E	1106	1114	Right-handed alpha
Helix 137	AP2	E	1118	1125	Right-handed alpha
Helix 138	AP3	E	1125	1139	Right-handed alpha
Helix 139	AP4	E	1144	1161	Right-handed alpha
Helix 140	AP5	E	1165	1183	Right-handed alpha
Helix 141	AP6	E	1184	1215	Right-handed alpha
Helix 142	AP7	E	1216	1235	Right-handed alpha
Helix 143	AP8	E	1236	1255	Right-handed alpha
Helix 144	AP9	E	1256	1271	Right-handed alpha
Helix 145	AQ1	E	1292	1311	Right-handed alpha
Helix 146	AQ2	E	1313	1331	Right-handed alpha
Helix 147	AQ3	E	1334	1355	Right-handed alpha
Helix 148	AQ4	E	1390	1401	Right-handed alpha
Helix 149	AQ5	E	1416	1420	Right-handed 310
Helix 150	AQ6	E	1447	1457	Right-handed alpha
Helix 151	AQ7	E	1513	1539	Right-handed alpha
Helix 152	AQ8	E	1544	1556	Right-handed alpha
Helix 153	AQ9	E	1561	1570	Right-handed alpha
Helix 154	AR1	E	1574	1579	Right-handed alpha
Helix 155	AR2	E	1580	1584	Right-handed 310
Helix 156	AR3	E	1585	1611	Right-handed alpha
Helix 157	AR4	E	1614	1635	Right-handed alpha
Helix 158	AR5	F	15	26	Right-handed alpha
Helix 159	AR6	F	61	66	Right-handed 310
Helix 160	AR7	F	67	72	Right-handed 310
Helix 161	AR8	F	86	96	Right-handed alpha
Helix 162	AR9	F	96	105	Right-handed alpha
Helix 163	AS1	F	116	121	Right-handed alpha
Helix 164	AS2	F	122	132	Right-handed alpha
Helix 165	AS3	F	138	150	Right-handed alpha
Helix 166	AS4	F	164	177	Right-handed alpha

There are 22 sheets in PDB entry 8ZJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	563	first strand
Strand 2	A	574	576	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	579	first strand
Strand 2	A	586	587	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	618	first strand
Strand 2	A	641	646	anti-parallel
Strand 3	A	650	655	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	35	40	anti-parallel
Strand 3	B	44	49	anti-parallel
Strand 4	B	58	60	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	398	407	anti-parallel
Strand 3	B	222	232	anti-parallel
Strand 4	B	278	284	anti-parallel
Strand 5	B	426	428	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	258	262	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	295	304	anti-parallel
Strand 4	B	318	328	anti-parallel
Strand 5	B	349	350	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	508	515	anti-parallel
Strand 3	B	444	454	anti-parallel
Strand 4	B	619	628	anti-parallel
Strand 5	B	565	570	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	467	474	anti-parallel
Strand 3	B	525	532	anti-parallel
Strand 4	B	548	553	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1362	1368	first strand
Strand 2	B	1379	1384	anti-parallel
Strand 3	B	1501	1509	anti-parallel
Strand 4	B	1487	1495	anti-parallel
Strand 5	B	1459	1464	anti-parallel
Strand 6	B	1425	1433	anti-parallel
Strand 7	B	1362	1368	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	45	first strand
Strand 2	C	50	57	anti-parallel
Strand 3	C	3	8	parallel
Strand 4	C	77	81	parallel
Strand 5	C	110	113	parallel
Strand 6	C	153	155	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	563	first strand
Strand 2	D	574	576	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	578	579	first strand
Strand 2	D	586	587	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	616	618	first strand
Strand 2	D	641	646	anti-parallel
Strand 3	D	650	655	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	44	49	anti-parallel
Strand 4	E	58	60	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	344	347	first strand
Strand 2	E	398	407	anti-parallel
Strand 3	E	222	232	anti-parallel
Strand 4	E	278	284	anti-parallel
Strand 5	E	426	428	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	238	247	anti-parallel
Strand 3	E	258	262	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	238	247	anti-parallel
Strand 3	E	295	304	anti-parallel
Strand 4	E	318	328	anti-parallel
Strand 5	E	349	350	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	484	485	first strand
Strand 2	E	508	515	anti-parallel
Strand 3	E	444	454	anti-parallel
Strand 4	E	619	628	anti-parallel
Strand 5	E	565	570	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	496	first strand
Strand 2	E	467	474	anti-parallel
Strand 3	E	525	532	anti-parallel
Strand 4	E	548	553	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1362	1368	first strand
Strand 2	E	1379	1384	anti-parallel
Strand 3	E	1501	1509	anti-parallel
Strand 4	E	1487	1495	anti-parallel
Strand 5	E	1459	1464	anti-parallel
Strand 6	E	1425	1433	anti-parallel
Strand 7	E	1362	1368	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	45	first strand
Strand 2	F	50	57	anti-parallel
Strand 3	F	3	8	parallel
Strand 4	F	77	81	parallel
Strand 5	F	110	113	parallel
Strand 6	F	153	155	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJJ