Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJM entry

There are 6 chains in PDB entry 8ZJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 530	ASN 727
B	MET 1	LEU 1642
C	MET 1	LEU 177
D	SER 530	ASN 727
E	MET 1	LEU 1642
F	MET 1	LEU 177

There are162 helices in PDB entry 8ZJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	530	540	Right-handed alpha
Helix 2	AA2	A	542	559	Right-handed alpha
Helix 3	AA3	A	620	626	Right-handed 310
Helix 4	AA4	A	634	638	Right-handed 310
Helix 5	AA5	A	658	673	Right-handed alpha
Helix 6	AA6	A	679	698	Right-handed alpha
Helix 7	AA7	B	85	108	Right-handed alpha
Helix 8	AA8	B	110	131	Right-handed alpha
Helix 9	AA9	B	137	160	Right-handed alpha
Helix 10	AB1	B	168	172	Right-handed 310
Helix 11	AB2	B	173	177	Right-handed 310
Helix 12	AB3	B	180	205	Right-handed alpha
Helix 13	AB4	B	208	217	Right-handed alpha
Helix 14	AB5	B	285	291	Right-handed alpha
Helix 15	AB6	B	329	334	Right-handed alpha
Helix 16	AB7	B	357	361	Right-handed 310
Helix 17	AB8	B	378	389	Right-handed alpha
Helix 18	AB9	B	409	417	Right-handed alpha
Helix 19	AC1	B	521	523	Right-handed 310
Helix 20	AC2	B	537	544	Right-handed alpha
Helix 21	AC3	B	575	580	Right-handed alpha
Helix 22	AC4	B	581	586	Right-handed alpha
Helix 23	AC5	B	591	605	Right-handed alpha
Helix 24	AC6	B	634	642	Right-handed alpha
Helix 25	AC7	B	646	648	Right-handed 310
Helix 26	AC8	B	649	657	Right-handed alpha
Helix 27	AC9	B	661	666	Right-handed alpha
Helix 28	AD1	B	668	683	Right-handed alpha
Helix 29	AD2	B	686	705	Right-handed alpha
Helix 30	AD3	B	712	722	Right-handed alpha
Helix 31	AD4	B	728	743	Right-handed alpha
Helix 32	AD5	B	749	759	Right-handed alpha
Helix 33	AD6	B	759	778	Right-handed alpha
Helix 34	AD7	B	783	804	Right-handed alpha
Helix 35	AD8	B	809	820	Right-handed alpha
Helix 36	AD9	B	820	828	Right-handed alpha
Helix 37	AE1	B	832	846	Right-handed alpha
Helix 38	AE2	B	852	866	Right-handed alpha
Helix 39	AE3	B	874	891	Right-handed alpha
Helix 40	AE4	B	894	915	Right-handed alpha
Helix 41	AE5	B	921	943	Right-handed alpha
Helix 42	AE6	B	949	963	Right-handed alpha
Helix 43	AE7	B	965	973	Right-handed alpha
Helix 44	AE8	B	978	998	Right-handed alpha
Helix 45	AE9	B	1006	1032	Right-handed alpha
Helix 46	AF1	B	1041	1055	Right-handed alpha
Helix 47	AF2	B	1058	1063	Right-handed alpha
Helix 48	AF3	B	1065	1077	Right-handed alpha
Helix 49	AF4	B	1078	1095	Right-handed alpha
Helix 50	AF5	B	1096	1099	Right-handed 310
Helix 51	AF6	B	1101	1115	Right-handed alpha
Helix 52	AF7	B	1117	1139	Right-handed alpha
Helix 53	AF8	B	1140	1142	Right-handed 310
Helix 54	AF9	B	1144	1162	Right-handed alpha
Helix 55	AG1	B	1165	1182	Right-handed alpha
Helix 56	AG2	B	1184	1212	Right-handed alpha
Helix 57	AG3	B	1217	1235	Right-handed alpha
Helix 58	AG4	B	1236	1254	Right-handed alpha
Helix 59	AG5	B	1256	1271	Right-handed alpha
Helix 60	AG6	B	1292	1311	Right-handed alpha
Helix 61	AG7	B	1313	1332	Right-handed alpha
Helix 62	AG8	B	1334	1355	Right-handed alpha
Helix 63	AG9	B	1390	1402	Right-handed alpha
Helix 64	AH1	B	1416	1421	Right-handed alpha
Helix 65	AH2	B	1447	1455	Right-handed alpha
Helix 66	AH3	B	1513	1539	Right-handed alpha
Helix 67	AH4	B	1544	1556	Right-handed alpha
Helix 68	AH5	B	1561	1570	Right-handed alpha
Helix 69	AH6	B	1572	1579	Right-handed alpha
Helix 70	AH7	B	1580	1584	Right-handed 310
Helix 71	AH8	B	1585	1610	Right-handed alpha
Helix 72	AH9	B	1614	1636	Right-handed alpha
Helix 73	AI1	C	15	26	Right-handed alpha
Helix 74	AI2	C	62	66	Right-handed 310
Helix 75	AI3	C	67	72	Right-handed alpha
Helix 76	AI4	C	86	96	Right-handed alpha
Helix 77	AI5	C	96	105	Right-handed alpha
Helix 78	AI6	C	116	121	Right-handed alpha
Helix 79	AI7	C	122	132	Right-handed alpha
Helix 80	AI8	C	138	150	Right-handed alpha
Helix 81	AI9	C	164	175	Right-handed alpha
Helix 82	AJ1	D	531	540	Right-handed alpha
Helix 83	AJ2	D	542	559	Right-handed alpha
Helix 84	AJ3	D	620	626	Right-handed 310
Helix 85	AJ4	D	634	638	Right-handed 310
Helix 86	AJ5	D	658	673	Right-handed alpha
Helix 87	AJ6	D	679	698	Right-handed alpha
Helix 88	AJ7	E	85	108	Right-handed alpha
Helix 89	AJ8	E	110	131	Right-handed alpha
Helix 90	AJ9	E	137	160	Right-handed alpha
Helix 91	AK1	E	168	172	Right-handed 310
Helix 92	AK2	E	173	177	Right-handed 310
Helix 93	AK3	E	180	205	Right-handed alpha
Helix 94	AK4	E	208	217	Right-handed alpha
Helix 95	AK5	E	285	291	Right-handed alpha
Helix 96	AK6	E	329	334	Right-handed alpha
Helix 97	AK7	E	357	361	Right-handed 310
Helix 98	AK8	E	378	389	Right-handed alpha
Helix 99	AK9	E	409	417	Right-handed alpha
Helix 100	AL1	E	521	523	Right-handed 310
Helix 101	AL2	E	537	544	Right-handed alpha
Helix 102	AL3	E	575	580	Right-handed alpha
Helix 103	AL4	E	581	586	Right-handed alpha
Helix 104	AL5	E	591	605	Right-handed alpha
Helix 105	AL6	E	634	642	Right-handed alpha
Helix 106	AL7	E	646	648	Right-handed 310
Helix 107	AL8	E	649	657	Right-handed alpha
Helix 108	AL9	E	661	666	Right-handed alpha
Helix 109	AM1	E	668	683	Right-handed alpha
Helix 110	AM2	E	686	705	Right-handed alpha
Helix 111	AM3	E	712	722	Right-handed alpha
Helix 112	AM4	E	728	743	Right-handed alpha
Helix 113	AM5	E	749	759	Right-handed alpha
Helix 114	AM6	E	759	778	Right-handed alpha
Helix 115	AM7	E	783	804	Right-handed alpha
Helix 116	AM8	E	809	820	Right-handed alpha
Helix 117	AM9	E	820	828	Right-handed alpha
Helix 118	AN1	E	832	846	Right-handed alpha
Helix 119	AN2	E	852	866	Right-handed alpha
Helix 120	AN3	E	874	891	Right-handed alpha
Helix 121	AN4	E	894	915	Right-handed alpha
Helix 122	AN5	E	921	943	Right-handed alpha
Helix 123	AN6	E	949	963	Right-handed alpha
Helix 124	AN7	E	965	973	Right-handed alpha
Helix 125	AN8	E	978	998	Right-handed alpha
Helix 126	AN9	E	1006	1032	Right-handed alpha
Helix 127	AO1	E	1041	1055	Right-handed alpha
Helix 128	AO2	E	1058	1063	Right-handed alpha
Helix 129	AO3	E	1065	1077	Right-handed alpha
Helix 130	AO4	E	1078	1095	Right-handed alpha
Helix 131	AO5	E	1096	1099	Right-handed 310
Helix 132	AO6	E	1101	1115	Right-handed alpha
Helix 133	AO7	E	1117	1139	Right-handed alpha
Helix 134	AO8	E	1140	1142	Right-handed 310
Helix 135	AO9	E	1144	1162	Right-handed alpha
Helix 136	AP1	E	1165	1182	Right-handed alpha
Helix 137	AP2	E	1184	1212	Right-handed alpha
Helix 138	AP3	E	1217	1235	Right-handed alpha
Helix 139	AP4	E	1236	1254	Right-handed alpha
Helix 140	AP5	E	1256	1271	Right-handed alpha
Helix 141	AP6	E	1292	1311	Right-handed alpha
Helix 142	AP7	E	1313	1332	Right-handed alpha
Helix 143	AP8	E	1334	1355	Right-handed alpha
Helix 144	AP9	E	1390	1402	Right-handed alpha
Helix 145	AQ1	E	1416	1421	Right-handed alpha
Helix 146	AQ2	E	1447	1455	Right-handed alpha
Helix 147	AQ3	E	1513	1539	Right-handed alpha
Helix 148	AQ4	E	1544	1556	Right-handed alpha
Helix 149	AQ5	E	1561	1570	Right-handed alpha
Helix 150	AQ6	E	1572	1579	Right-handed alpha
Helix 151	AQ7	E	1580	1584	Right-handed 310
Helix 152	AQ8	E	1585	1610	Right-handed alpha
Helix 153	AQ9	E	1614	1636	Right-handed alpha
Helix 154	AR1	F	15	26	Right-handed alpha
Helix 155	AR2	F	62	66	Right-handed 310
Helix 156	AR3	F	67	72	Right-handed alpha
Helix 157	AR4	F	86	96	Right-handed alpha
Helix 158	AR5	F	96	105	Right-handed alpha
Helix 159	AR6	F	116	121	Right-handed alpha
Helix 160	AR7	F	122	132	Right-handed alpha
Helix 161	AR8	F	138	150	Right-handed alpha
Helix 162	AR9	F	164	175	Right-handed alpha

There are 22 sheets in PDB entry 8ZJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	575	579	anti-parallel
Strand 3	A	586	588	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	615	618	first strand
Strand 2	A	642	646	anti-parallel
Strand 3	A	650	654	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	44	48	anti-parallel
Strand 3	B	59	60	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	258	262	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	238	247	anti-parallel
Strand 3	B	295	304	anti-parallel
Strand 4	B	318	328	anti-parallel
Strand 5	B	343	350	anti-parallel
Strand 6	B	398	407	anti-parallel
Strand 7	B	222	232	anti-parallel
Strand 8	B	278	284	anti-parallel
Strand 9	B	426	428	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	508	516	anti-parallel
Strand 3	B	444	454	anti-parallel
Strand 4	B	619	624	anti-parallel
Strand 5	B	565	570	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	485	first strand
Strand 2	B	508	516	anti-parallel
Strand 3	B	444	454	anti-parallel
Strand 4	B	627	628	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	466	474	anti-parallel
Strand 3	B	525	533	anti-parallel
Strand 4	B	548	552	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1362	1367	first strand
Strand 2	B	1379	1384	anti-parallel
Strand 3	B	1502	1509	anti-parallel
Strand 4	B	1487	1495	anti-parallel
Strand 5	B	1459	1463	anti-parallel
Strand 6	B	1432	1433	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1467	1469	first strand
Strand 2	B	1482	1484	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	44	first strand
Strand 2	C	51	58	anti-parallel
Strand 3	C	2	10	parallel
Strand 4	C	77	83	parallel
Strand 5	C	110	115	parallel
Strand 6	C	153	156	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	561	562	first strand
Strand 2	D	575	579	anti-parallel
Strand 3	D	586	588	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	615	618	first strand
Strand 2	D	642	646	anti-parallel
Strand 3	D	650	654	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	40	first strand
Strand 2	E	44	48	anti-parallel
Strand 3	E	59	60	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	238	247	anti-parallel
Strand 3	E	258	262	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	252	253	first strand
Strand 2	E	238	247	anti-parallel
Strand 3	E	295	304	anti-parallel
Strand 4	E	318	328	anti-parallel
Strand 5	E	343	350	anti-parallel
Strand 6	E	398	407	anti-parallel
Strand 7	E	222	232	anti-parallel
Strand 8	E	278	284	anti-parallel
Strand 9	E	426	428	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	484	485	first strand
Strand 2	E	508	516	anti-parallel
Strand 3	E	444	454	anti-parallel
Strand 4	E	619	624	anti-parallel
Strand 5	E	565	570	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	484	485	first strand
Strand 2	E	508	516	anti-parallel
Strand 3	E	444	454	anti-parallel
Strand 4	E	627	628	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	495	496	first strand
Strand 2	E	466	474	anti-parallel
Strand 3	E	525	533	anti-parallel
Strand 4	E	548	552	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1362	1367	first strand
Strand 2	E	1379	1384	anti-parallel
Strand 3	E	1502	1509	anti-parallel
Strand 4	E	1487	1495	anti-parallel
Strand 5	E	1459	1463	anti-parallel
Strand 6	E	1432	1433	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1467	1469	first strand
Strand 2	E	1482	1484	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	44	first strand
Strand 2	F	51	58	anti-parallel
Strand 3	F	2	10	parallel
Strand 4	F	77	83	parallel
Strand 5	F	110	115	parallel
Strand 6	F	153	156	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJM