Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZJX entry

There are 6 chains in PDB entry 8ZJX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 29	VAL 521
B	GLN 29	VAL 521
D	ILE 2	PHE 206
E	GLN 30	ARG 322
F	GLN 30	ALA 513
G	GLY 2	ILE 226

There are 23 helices in PDB entry 8ZJX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	93	Right-handed 310
Helix 2	AA2	A	249	322	Right-handed alpha
Helix 3	AA3	A	333	337	Right-handed 310
Helix 4	AA4	A	416	419	Right-handed 310
Helix 5	AA5	A	457	459	Right-handed 310
Helix 6	AA6	B	84	88	Right-handed 310
Helix 7	AA7	B	89	93	Right-handed 310
Helix 8	AA8	B	103	106	Right-handed 310
Helix 9	AA9	B	116	120	Right-handed 310
Helix 10	AB1	B	250	322	Right-handed alpha
Helix 11	AB2	D	29	31	Right-handed 310
Helix 12	AB3	E	104	106	Right-handed 310
Helix 13	AB4	E	239	242	Right-handed 310
Helix 14	AB5	E	245	254	Right-handed alpha
Helix 15	AB6	E	255	322	Right-handed alpha
Helix 16	AB7	F	90	94	Right-handed 310
Helix 17	AB8	F	104	107	Right-handed 310
Helix 18	AB9	F	239	243	Right-handed 310
Helix 19	AC1	F	245	319	Right-handed alpha
Helix 20	AC2	F	325	337	Right-handed alpha
Helix 21	AC3	F	425	428	Right-handed 310
Helix 22	AC4	G	88	92	Right-handed 310
Helix 23	AC5	G	213	217	Right-handed 310

There are 35 sheets in PDB entry 8ZJX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	49	54	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	96	98	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	123	128	anti-parallel
Strand 3	A	133	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	83	84	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	160	170	anti-parallel
Strand 3	A	156	157	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	152	first strand
Strand 2	A	160	170	anti-parallel
Strand 3	A	201	209	anti-parallel
Strand 4	A	190	195	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	175	179	anti-parallel
Strand 3	A	216	222	anti-parallel
Strand 4	A	229	235	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	343	first strand
Strand 2	A	349	352	anti-parallel
Strand 3	A	497	499	anti-parallel
Strand 4	A	385	391	anti-parallel
Strand 5	A	325	327	parallel
Strand 6	B	325	327	anti-parallel
Strand 7	B	385	391	parallel
Strand 8	B	449	455	anti-parallel
Strand 9	B	460	465	anti-parallel
Strand 10	B	470	474	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	350	first strand
Strand 2	B	497	499	anti-parallel
Strand 3	B	385	391	anti-parallel
Strand 4	B	325	327	parallel
Strand 5	A	325	327	anti-parallel
Strand 6	A	385	391	parallel
Strand 7	A	449	455	anti-parallel
Strand 8	A	460	465	anti-parallel
Strand 9	A	471	474	anti-parallel
Strand 10	B	516	517	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	484	490	anti-parallel
Strand 3	A	398	404	anti-parallel
Strand 4	A	421	427	anti-parallel
Strand 5	A	430	432	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	47	54	anti-parallel
Strand 3	B	107	112	anti-parallel
Strand 4	B	96	102	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	42	first strand
Strand 2	B	132	143	parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	63	67	anti-parallel
Strand 5	B	76	78	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	156	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	201	209	anti-parallel
Strand 4	B	190	195	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	179	first strand
Strand 2	B	216	223	anti-parallel
Strand 3	B	228	235	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	484	489	anti-parallel
Strand 3	B	398	404	anti-parallel
Strand 4	B	421	427	anti-parallel
Strand 5	B	430	432	anti-parallel
Strand 6	B	440	441	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	109	118	parallel
Strand 3	D	88	96	anti-parallel
Strand 4	D	33	40	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	22	first strand
Strand 2	D	74	79	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	135	first strand
Strand 2	D	138	146	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	160	163	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	135	first strand
Strand 2	D	138	146	anti-parallel
Strand 3	D	176	184	anti-parallel
Strand 4	D	167	170	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	156	first strand
Strand 2	D	191	195	anti-parallel
Strand 3	D	200	202	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	48	55	anti-parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	97	103	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	43	first strand
Strand 2	E	133	144	parallel
Strand 3	E	122	130	anti-parallel
Strand 4	E	64	69	anti-parallel
Strand 5	E	75	79	anti-parallel
Strand 6	E	84	85	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	191	first strand
Strand 2	E	202	211	anti-parallel
Strand 3	E	161	171	anti-parallel
Strand 4	E	151	157	anti-parallel
Strand 5	F	230	237	parallel
Strand 6	F	218	223	anti-parallel
Strand 7	F	176	181	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	186	187	first strand
Strand 2	E	176	180	anti-parallel
Strand 3	E	218	224	anti-parallel
Strand 4	E	229	237	anti-parallel
Strand 5	F	151	158	parallel
Strand 6	F	161	167	anti-parallel
Strand 7	F	206	210	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	43	first strand
Strand 2	F	133	144	parallel
Strand 3	F	122	130	anti-parallel
Strand 4	F	64	69	anti-parallel
Strand 5	F	74	80	anti-parallel
Strand 6	F	83	85	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	50	first strand
Strand 2	F	108	113	anti-parallel
Strand 3	F	99	103	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	195	first strand
Strand 2	F	203	204	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	394	400	parallel
Strand 3	F	459	465	anti-parallel
Strand 4	F	470	475	anti-parallel
Strand 5	F	481	485	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	338	339	first strand
Strand 2	F	394	400	parallel
Strand 3	F	509	510	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	353	355	first strand
Strand 2	F	362	364	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	383	385	first strand
Strand 2	F	494	499	anti-parallel
Strand 3	F	407	413	anti-parallel
Strand 4	F	430	436	anti-parallel
Strand 5	F	440	443	anti-parallel
Strand 6	F	449	450	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	113	118	parallel
Strand 3	G	93	101	anti-parallel
Strand 4	G	33	40	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	113	118	parallel
Strand 3	G	93	101	anti-parallel
Strand 4	G	108	109	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	129	133	first strand
Strand 2	G	147	155	anti-parallel
Strand 3	G	187	194	anti-parallel
Strand 4	G	176	177	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	167	first strand
Strand 2	G	203	209	anti-parallel
Strand 3	G	219	223	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZJX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZJX