Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZK1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZK1 entry

There are 4 chains in PDB entry 8ZK1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 29SER 243
B
 GLN 29SER 243
E
 GLN 30ARG 243
F
 GLN 30ARG 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8ZK1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
116 120Right-handed 310
Helix 2
AA2
A
237 241Right-handed 310
Helix 3
AA3
E
103 106Right-handed 310
Helix 4
AA4
F
90 94Right-handed 310
Helix 5
AA5
F
239 242Right-handed 310
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There are 18 sheets in PDB entry 8ZK1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
47 54anti-parallel
Strand 3
A
108 112anti-parallel
Strand 4
A
96 99anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
132 142parallel
Strand 3
A
121 129anti-parallel
Strand 4
A
63 67anti-parallel
Strand 5
A
76 79anti-parallel
Strand 6
A
82 84anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 151first strand
Strand 2
A
164 170anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
190 195anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
160 161anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 179first strand
Strand 2
A
216 223anti-parallel
Strand 3
A
229 235anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
47 53anti-parallel
Strand 3
B
107 112anti-parallel
Strand 4
B
96 99anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
63 67anti-parallel
Strand 4
B
121 129anti-parallel
Strand 5
B
132 135anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
76 79anti-parallel
Strand 3
B
63 67anti-parallel
Strand 4
B
121 129anti-parallel
Strand 5
B
138 140anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
161 170anti-parallel
Strand 3
B
201 209anti-parallel
Strand 4
B
190 192anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
175 179anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
228 230anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
175 179anti-parallel
Strand 3
B
216 223anti-parallel
Strand 4
B
233 235anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
33 34first strand
Strand 2
E
48 54anti-parallel
Strand 3
E
108 113anti-parallel
Strand 4
E
97 100anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
40 43first strand
Strand 2
E
134 144parallel
Strand 3
E
122 129anti-parallel
Strand 4
E
64 69anti-parallel
Strand 5
E
75 80anti-parallel
Strand 6
E
83 84anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
190 191first strand
Strand 2
E
202 210anti-parallel
Strand 3
E
162 171anti-parallel
Strand 4
E
151 156anti-parallel
Strand 5
F
230 237parallel
Strand 6
F
218 223anti-parallel
Strand 7
F
176 181anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 177first strand
Strand 2
E
218 223anti-parallel
Strand 3
E
180 181anti-parallel
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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
176 177first strand
Strand 2
E
218 223anti-parallel
Strand 3
E
230 236anti-parallel
Strand 4
F
151 153parallel
Strand 5
F
162 171anti-parallel
Strand 6
F
202 210anti-parallel
Strand 7
F
190 191anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
33 34first strand
Strand 2
F
48 54anti-parallel
Strand 3
F
108 113anti-parallel
Strand 4
F
97 103anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
40 43first strand
Strand 2
F
133 144parallel
Strand 3
F
122 130anti-parallel
Strand 4
F
64 69anti-parallel
Strand 5
F
74 80anti-parallel
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