Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZK2 entry

There are 36 chains in PDB entry 8ZK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	SER 20	GLY 361
L	ALA 2	TRP 274
M	SER 34	ALA 320
H	MET 1	LYS 254
B	SER 9	VAL 57
A	MET 1	LYS 53
D	SER 9	VAL 57
E	MET 1	LYS 53
F	SER 9	VAL 57
G	MET 1	LYS 53
I	SER 9	VAL 57
J	MET 1	LYS 53
K	SER 9	VAL 57
N	MET 1	LYS 53
O	SER 9	VAL 57
P	MET 1	LYS 53
Q	SER 9	VAL 57
R	MET 1	LYS 53
S	SER 9	VAL 57
T	MET 1	LYS 53
U	SER 9	VAL 57
V	MET 1	LYS 53
W	SER 9	VAL 57
X	MET 1	LYS 53
Y	SER 9	VAL 57
Z	HIS 6	ALA 51
a	SER 9	VAL 57
b	MET 1	LYS 53
c	SER 9	VAL 57
d	MET 1	LYS 53
e	SER 9	VAL 57
f	MET 1	LYS 53
g	SER 9	VAL 57
h	MET 1	LYS 53
i	SER 9	VAL 57
j	MET 1	LYS 53

There are104 helices in PDB entry 8ZK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	26	45	Right-handed alpha
Helix 2	AA2	C	66	75	Right-handed alpha
Helix 3	AA3	C	76	80	Right-handed 310
Helix 4	AA4	C	94	99	Right-handed alpha
Helix 5	AA5	C	109	124	Right-handed alpha
Helix 6	AA6	C	128	133	Right-handed 310
Helix 7	AA7	C	144	164	Right-handed alpha
Helix 8	AA8	C	164	169	Right-handed alpha
Helix 9	AA9	C	174	179	Right-handed alpha
Helix 10	AB1	C	212	216	Right-handed 310
Helix 11	AB2	C	224	229	Right-handed alpha
Helix 12	AB3	C	252	271	Right-handed alpha
Helix 13	AB4	C	273	277	Right-handed 310
Helix 14	AB5	C	291	310	Right-handed alpha
Helix 15	AB6	C	314	318	Right-handed 310
Helix 16	AB7	C	333	339	Right-handed alpha
Helix 17	AB8	C	343	348	Right-handed 310
Helix 18	AB9	C	354	359	Right-handed 310
Helix 19	AC1	L	7	11	Right-handed 310
Helix 20	AC2	L	33	56	Right-handed alpha
Helix 21	AC3	L	72	76	Right-handed 310
Helix 22	AC4	L	85	114	Right-handed alpha
Helix 23	AC5	L	117	135	Right-handed alpha
Helix 24	AC6	L	135	142	Right-handed alpha
Helix 25	AC7	L	143	147	Right-handed 310
Helix 26	AC8	L	153	165	Right-handed alpha
Helix 27	AC9	L	166	167	Right-handed 310
Helix 28	AD1	L	168	171	Right-handed 310
Helix 29	AD2	L	172	201	Right-handed alpha
Helix 30	AD3	L	210	222	Right-handed alpha
Helix 31	AD4	L	227	252	Right-handed alpha
Helix 32	AD5	L	261	264	Right-handed 310
Helix 33	AD6	L	265	270	Right-handed alpha
Helix 34	AD7	M	39	44	Right-handed alpha
Helix 35	AD8	M	53	78	Right-handed alpha
Helix 36	AD9	M	82	90	Right-handed alpha
Helix 37	AE1	M	99	103	Right-handed 310
Helix 38	AE2	M	109	112	Right-handed 310
Helix 39	AE3	M	113	141	Right-handed alpha
Helix 40	AE4	M	145	163	Right-handed alpha
Helix 41	AE5	M	163	170	Right-handed alpha
Helix 42	AE6	M	171	175	Right-handed 310
Helix 43	AE7	M	180	194	Right-handed alpha
Helix 44	AE8	M	196	199	Right-handed 310
Helix 45	AE9	M	200	227	Right-handed alpha
Helix 46	AF1	M	228	231	Right-handed 310
Helix 47	AF2	M	234	241	Right-handed alpha
Helix 48	AF3	M	243	258	Right-handed alpha
Helix 49	AF4	M	264	287	Right-handed alpha
Helix 50	AF5	M	294	302	Right-handed alpha
Helix 51	AF6	H	10	34	Right-handed alpha
Helix 52	AF7	H	101	106	Right-handed alpha
Helix 53	AF8	H	107	111	Right-handed 310
Helix 54	AF9	H	200	202	Right-handed 310
Helix 55	AG1	H	217	222	Right-handed alpha
Helix 56	AG2	H	234	252	Right-handed alpha
Helix 57	AG3	B	14	47	Right-handed alpha
Helix 58	AG4	A	5	11	Right-handed 310
Helix 59	AG5	A	13	38	Right-handed alpha
Helix 60	AG6	D	14	47	Right-handed alpha
Helix 61	AG7	E	5	11	Right-handed 310
Helix 62	AG8	E	13	38	Right-handed alpha
Helix 63	AG9	F	14	47	Right-handed alpha
Helix 64	AH1	G	5	11	Right-handed 310
Helix 65	AH2	G	13	38	Right-handed alpha
Helix 66	AH3	I	14	47	Right-handed alpha
Helix 67	AH4	J	5	11	Right-handed 310
Helix 68	AH5	J	13	38	Right-handed alpha
Helix 69	AH6	K	14	47	Right-handed alpha
Helix 70	AH7	N	5	11	Right-handed 310
Helix 71	AH8	N	13	38	Right-handed alpha
Helix 72	AH9	O	16	47	Right-handed alpha
Helix 73	AI1	P	5	11	Right-handed 310
Helix 74	AI2	P	13	38	Right-handed alpha
Helix 75	AI3	Q	14	47	Right-handed alpha
Helix 76	AI4	R	5	11	Right-handed 310
Helix 77	AI5	R	13	38	Right-handed alpha
Helix 78	AI6	S	14	47	Right-handed alpha
Helix 79	AI7	T	5	11	Right-handed 310
Helix 80	AI8	T	13	38	Right-handed alpha
Helix 81	AI9	U	14	47	Right-handed alpha
Helix 82	AJ1	V	5	11	Right-handed 310
Helix 83	AJ2	V	13	38	Right-handed alpha
Helix 84	AJ3	W	14	47	Right-handed alpha
Helix 85	AJ4	X	5	11	Right-handed 310
Helix 86	AJ5	X	13	38	Right-handed alpha
Helix 87	AJ6	Y	14	47	Right-handed alpha
Helix 88	AJ7	Z	6	11	Right-handed 310
Helix 89	AJ8	Z	13	38	Right-handed alpha
Helix 90	AJ9	a	14	47	Right-handed alpha
Helix 91	AK1	b	5	11	Right-handed 310
Helix 92	AK2	b	13	38	Right-handed alpha
Helix 93	AK3	c	14	47	Right-handed alpha
Helix 94	AK4	d	5	11	Right-handed 310
Helix 95	AK5	d	13	38	Right-handed alpha
Helix 96	AK6	e	16	47	Right-handed alpha
Helix 97	AK7	f	5	11	Right-handed 310
Helix 98	AK8	f	13	38	Right-handed alpha
Helix 99	AK9	g	14	47	Right-handed alpha
Helix 100	AL1	h	5	11	Right-handed 310
Helix 101	AL2	h	13	39	Right-handed alpha
Helix 102	AL3	i	14	47	Right-handed alpha
Helix 103	AL4	j	5	11	Right-handed 310
Helix 104	AL5	j	13	38	Right-handed alpha

There are 9 sheets in PDB entry 8ZK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	53	first strand
Strand 2	C	62	65	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	331	332	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	25	27	first strand
Strand 2	L	30	32	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	35	36	first strand
Strand 2	M	47	48	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	94	95	first strand
Strand 2	M	178	179	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	61	64	first strand
Strand 2	H	70	73	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	85	86	first strand
Strand 2	H	97	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	131	first strand
Strand 2	H	159	169	anti-parallel
Strand 3	H	174	182	anti-parallel
Strand 4	H	194	198	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	131	first strand
Strand 2	H	159	169	anti-parallel
Strand 3	H	151	154	anti-parallel
Strand 4	H	210	213	parallel
Strand 5	H	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZK2