Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZK3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZK3 entry

There are 4 chains in PDB entry 8ZK3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 29	PRO 242
B	PHE 30	PRO 242
D	ILE 2	ASP 204
G	GLY 2	ILE 225

There are 5 helices in PDB entry 8ZK3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	89	93	Right-handed 310
Helix 2	AA2	B	102	106	Right-handed 310
Helix 3	AA3	D	29	33	Right-handed 310
Helix 4	AA4	G	88	92	Right-handed 310
Helix 5	AA5	G	201	206	Right-handed 310

There are 20 sheets in PDB entry 8ZK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	47	54	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	96	99	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	132	142	parallel
Strand 3	A	121	129	anti-parallel
Strand 4	A	63	67	anti-parallel
Strand 5	A	76	78	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	161	168	anti-parallel
Strand 3	A	202	209	anti-parallel
Strand 4	A	190	193	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	186	first strand
Strand 2	A	175	179	anti-parallel
Strand 3	A	216	222	anti-parallel
Strand 4	A	229	235	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	47	54	anti-parallel
Strand 3	B	108	112	anti-parallel
Strand 4	B	96	99	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	63	67	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	132	140	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	156	first strand
Strand 2	B	161	170	anti-parallel
Strand 3	B	201	208	anti-parallel
Strand 4	B	190	195	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	179	first strand
Strand 2	B	216	223	anti-parallel
Strand 3	B	228	235	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	19	24	first strand
Strand 2	D	74	79	anti-parallel
Strand 3	D	64	69	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	34	40	anti-parallel
Strand 3	D	89	90	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	50	first strand
Strand 2	D	34	40	anti-parallel
Strand 3	D	93	95	anti-parallel
Strand 4	D	108	109	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	133	first strand
Strand 2	D	138	140	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	192	195	anti-parallel
Strand 3	D	198	200	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	168	first strand
Strand 2	D	176	182	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	74	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	117	121	parallel
Strand 3	G	93	102	anti-parallel
Strand 4	G	35	40	anti-parallel
Strand 5	G	50	52	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	13	first strand
Strand 2	G	117	121	parallel
Strand 3	G	93	102	anti-parallel
Strand 4	G	109	113	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	135	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	191	198	anti-parallel
Strand 4	G	180	181	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	134	135	first strand
Strand 2	G	151	157	anti-parallel
Strand 3	G	191	198	anti-parallel
Strand 4	G	185	186	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	169	first strand
Strand 2	G	209	213	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZK3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZK3