Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZK8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZK8 entry

There are 2 chains in PDB entry 8ZK8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3ALA 548
B
 THR 3ALA 548
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 8ZK8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
28 30Right-handed 310
Helix 3
AA3
A
31 41Right-handed alpha
Helix 4
AA4
A
51 67Right-handed alpha
Helix 5
AA5
A
76 82Right-handed alpha
Helix 6
AA6
A
82 92Right-handed alpha
Helix 7
AA7
A
104 110Right-handed alpha
Helix 8
AA8
A
124 130Right-handed alpha
Helix 9
AA9
A
131 134Right-handed 310
Helix 10
AB1
A
144 160Right-handed alpha
Helix 11
AB2
A
169 173Right-handed alpha
Helix 12
AB3
A
191 208Right-handed alpha
Helix 13
AB4
A
217 223Right-handed alpha
Helix 14
AB5
A
225 236Right-handed alpha
Helix 15
AB6
A
262 266Right-handed 310
Helix 16
AB7
A
267 275Right-handed alpha
Helix 17
AB8
A
323 339Right-handed alpha
Helix 18
AB9
A
361 373Right-handed alpha
Helix 19
AC1
A
384 391Right-handed alpha
Helix 20
AC2
A
411 424Right-handed alpha
Helix 21
AC3
A
435 441Right-handed alpha
Helix 22
AC4
A
443 451Right-handed alpha
Helix 23
AC5
A
465 472Right-handed alpha
Helix 24
AC6
A
476 480Right-handed 310
Helix 25
AC7
A
485 487Right-handed 310
Helix 26
AC8
A
488 493Right-handed alpha
Helix 27
AC9
A
506 517Right-handed alpha
Helix 28
AD1
A
536 547Right-handed alpha
Helix 29
AD2
B
6 18Right-handed alpha
Helix 30
AD3
B
31 41Right-handed alpha
Helix 31
AD4
B
51 67Right-handed alpha
Helix 32
AD5
B
76 82Right-handed alpha
Helix 33
AD6
B
82 92Right-handed alpha
Helix 34
AD7
B
104 110Right-handed alpha
Helix 35
AD8
B
124 131Right-handed alpha
Helix 36
AD9
B
132 134Right-handed 310
Helix 37
AE1
B
144 160Right-handed alpha
Helix 38
AE2
B
169 173Right-handed alpha
Helix 39
AE3
B
191 208Right-handed alpha
Helix 40
AE4
B
217 223Right-handed alpha
Helix 41
AE5
B
225 236Right-handed alpha
Helix 42
AE6
B
262 266Right-handed 310
Helix 43
AE7
B
267 275Right-handed alpha
Helix 44
AE8
B
323 339Right-handed alpha
Helix 45
AE9
B
361 373Right-handed alpha
Helix 46
AF1
B
384 391Right-handed alpha
Helix 47
AF2
B
411 424Right-handed alpha
Helix 48
AF3
B
435 441Right-handed alpha
Helix 49
AF4
B
443 451Right-handed alpha
Helix 50
AF5
B
465 472Right-handed alpha
Helix 51
AF6
B
476 480Right-handed 310
Helix 52
AF7
B
485 487Right-handed 310
Helix 53
AF8
B
488 493Right-handed alpha
Helix 54
AF9
B
506 517Right-handed alpha
Helix 55
AG1
B
536 546Right-handed alpha
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There are 6 sheets in PDB entry 8ZK8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
22 25parallel
Strand 3
A
69 74parallel
Strand 4
A
96 102parallel
Strand 5
A
163 168parallel
Strand 6
A
136 139parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 242first strand
Strand 2
A
212 216parallel
Strand 3
A
279 283parallel
Strand 4
A
304 307parallel
Strand 5
A
311 314anti-parallel
Strand 6
A
317 320anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 402first strand
Strand 2
A
378 381parallel
Strand 3
A
429 434parallel
Strand 4
A
456 461parallel
Strand 5
A
523 529parallel
Strand 6
A
499 504parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
22 25parallel
Strand 3
B
69 74parallel
Strand 4
B
96 102parallel
Strand 5
B
163 168parallel
Strand 6
B
136 139parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 242first strand
Strand 2
B
212 216parallel
Strand 3
B
279 283parallel
Strand 4
B
304 307parallel
Strand 5
B
311 314anti-parallel
Strand 6
B
317 320anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
378 381parallel
Strand 3
B
429 434parallel
Strand 4
B
456 461parallel
Strand 5
B
523 529parallel
Strand 6
B
499 504parallel
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