Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKD entry

There is 1 chain in PDB entry 8ZKD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1060PRO 1357
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8ZKD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1063 1070Right-handed alpha
Helix 2
AA2
A
1076 1078Right-handed 310
Helix 3
AA3
A
1121 1137Right-handed alpha
Helix 4
AA4
A
1168 1175Right-handed alpha
Helix 5
AA5
A
1181 1202Right-handed alpha
Helix 6
AA6
A
1210 1212Right-handed 310
Helix 7
AA7
A
1235 1240Right-handed 310
Helix 8
AA8
A
1243 1247Right-handed 310
Helix 9
AA9
A
1248 1254Right-handed 310
Helix 10
AB1
A
1255 1262Right-handed alpha
Helix 11
AB2
A
1265 1282Right-handed alpha
Helix 12
AB3
A
1292 1294Right-handed 310
Helix 13
AB4
A
1295 1302Right-handed alpha
Helix 14
AB5
A
1313 1324Right-handed alpha
Helix 15
AB6
A
1333 1347Right-handed alpha
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There are 2 sheets in PDB entry 8ZKD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1080 1090first strand
Strand 2
A
1094 1102anti-parallel
Strand 3
A
1108 1116anti-parallel
Strand 4
A
1158 1161anti-parallel
Strand 5
A
1148 1150anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1214 1216first strand
Strand 2
A
1222 1224anti-parallel
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