Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZKK entry

There are 9 chains in PDB entry 8ZKK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	MET 1	SER 521
A	MET 1	ALA 606
B	MET 1	GLY 202
U	MET 1	ALA 606
D	MET 1	GLY 202
m	TYR 202	PRO 220
p	MET 1	GLY 50
u	MET 1	ASP 49
z	MET 1	ASP 49

There are 84 helices in PDB entry 8ZKK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	18	22	Right-handed 310
Helix 2	AA2	O	283	290	Right-handed alpha
Helix 3	AA3	O	376	380	Right-handed 310
Helix 4	AA4	A	11	47	Right-handed alpha
Helix 5	AA5	A	54	65	Right-handed alpha
Helix 6	AA6	A	75	92	Right-handed alpha
Helix 7	AA7	A	105	126	Right-handed alpha
Helix 8	AA8	A	128	143	Right-handed alpha
Helix 9	AA9	A	211	215	Right-handed 310
Helix 10	AB1	A	226	236	Right-handed alpha
Helix 11	AB2	A	240	246	Right-handed alpha
Helix 12	AB3	A	247	249	Right-handed 310
Helix 13	AB4	A	293	298	Right-handed alpha
Helix 14	AB5	A	349	354	Right-handed alpha
Helix 15	AB6	A	354	376	Right-handed alpha
Helix 16	AB7	A	384	387	Right-handed 310
Helix 17	AB8	A	388	393	Right-handed alpha
Helix 18	AB9	A	404	408	Right-handed 310
Helix 19	AC1	A	411	415	Right-handed alpha
Helix 20	AC2	A	427	444	Right-handed alpha
Helix 21	AC3	A	460	486	Right-handed alpha
Helix 22	AC4	A	486	502	Right-handed alpha
Helix 23	AC5	A	503	512	Right-handed alpha
Helix 24	AC6	A	513	515	Right-handed 310
Helix 25	AC7	A	517	522	Right-handed alpha
Helix 26	AC8	A	524	531	Right-handed alpha
Helix 27	AC9	A	544	561	Right-handed alpha
Helix 28	AD1	A	562	568	Right-handed alpha
Helix 29	AD2	A	570	583	Right-handed alpha
Helix 30	AD3	A	586	591	Right-handed alpha
Helix 31	AD4	A	596	606	Right-handed alpha
Helix 32	AD5	B	2	14	Right-handed alpha
Helix 33	AD6	B	21	37	Right-handed alpha
Helix 34	AD7	B	42	46	Right-handed 310
Helix 35	AD8	B	93	97	Right-handed 310
Helix 36	AD9	B	135	139	Right-handed 310
Helix 37	AE1	B	144	150	Right-handed alpha
Helix 38	AE2	B	150	167	Right-handed alpha
Helix 39	AE3	B	170	195	Right-handed alpha
Helix 40	AE4	U	11	47	Right-handed alpha
Helix 41	AE5	U	54	65	Right-handed alpha
Helix 42	AE6	U	75	92	Right-handed alpha
Helix 43	AE7	U	105	126	Right-handed alpha
Helix 44	AE8	U	128	143	Right-handed alpha
Helix 45	AE9	U	211	215	Right-handed 310
Helix 46	AF1	U	226	236	Right-handed alpha
Helix 47	AF2	U	240	246	Right-handed alpha
Helix 48	AF3	U	246	251	Right-handed alpha
Helix 49	AF4	U	259	263	Right-handed 310
Helix 50	AF5	U	293	298	Right-handed alpha
Helix 51	AF6	U	349	376	Right-handed alpha
Helix 52	AF7	U	384	387	Right-handed 310
Helix 53	AF8	U	388	393	Right-handed alpha
Helix 54	AF9	U	404	408	Right-handed 310
Helix 55	AG1	U	411	414	Right-handed 310
Helix 56	AG2	U	427	444	Right-handed alpha
Helix 57	AG3	U	460	465	Right-handed alpha
Helix 58	AG4	U	466	486	Right-handed alpha
Helix 59	AG5	U	486	502	Right-handed alpha
Helix 60	AG6	U	503	512	Right-handed alpha
Helix 61	AG7	U	513	515	Right-handed 310
Helix 62	AG8	U	517	522	Right-handed alpha
Helix 63	AG9	U	524	531	Right-handed alpha
Helix 64	AH1	U	544	561	Right-handed alpha
Helix 65	AH2	U	562	568	Right-handed alpha
Helix 66	AH3	U	570	583	Right-handed alpha
Helix 67	AH4	U	587	591	Right-handed 310
Helix 68	AH5	U	596	606	Right-handed alpha
Helix 69	AH6	D	2	14	Right-handed alpha
Helix 70	AH7	D	21	37	Right-handed alpha
Helix 71	AH8	D	42	46	Right-handed 310
Helix 72	AH9	D	93	97	Right-handed 310
Helix 73	AI1	D	135	139	Right-handed 310
Helix 74	AI2	D	144	150	Right-handed alpha
Helix 75	AI3	D	150	166	Right-handed alpha
Helix 76	AI4	D	170	195	Right-handed alpha
Helix 77	AI5	p	11	15	Right-handed 310
Helix 78	AI6	p	25	27	Right-handed 310
Helix 79	AI7	p	28	48	Right-handed alpha
Helix 80	AI8	u	25	27	Right-handed 310
Helix 81	AI9	u	28	48	Right-handed alpha
Helix 82	AJ1	z	11	15	Right-handed 310
Helix 83	AJ2	z	25	27	Right-handed 310
Helix 84	AJ3	z	28	48	Right-handed alpha

There are 24 sheets in PDB entry 8ZKK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	2	6	first strand
Strand 2	O	506	515	anti-parallel
Strand 3	O	439	448	anti-parallel
Strand 4	O	483	490	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	12	13	first strand
Strand 2	O	26	27	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	29	31	first strand
Strand 2	O	413	417	anti-parallel
Strand 3	O	492	499	anti-parallel
Strand 4	O	454	461	anti-parallel
Strand 5	O	469	476	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	33	35	first strand
Strand 2	O	40	42	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	45	48	first strand
Strand 2	O	398	401	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	60	63	first strand
Strand 2	O	71	75	anti-parallel
Strand 3	O	80	84	anti-parallel
Strand 4	O	87	90	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	106	110	first strand
Strand 2	O	113	117	anti-parallel
Strand 3	O	124	126	anti-parallel
Strand 4	O	132	134	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	143	150	first strand
Strand 2	O	153	160	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	216	219	first strand
Strand 2	O	222	228	anti-parallel
Strand 3	O	235	242	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	252	255	first strand
Strand 2	O	258	262	anti-parallel
Strand 3	O	267	270	anti-parallel
Strand 4	O	275	278	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	300	304	first strand
Strand 2	O	309	314	anti-parallel
Strand 3	O	324	331	anti-parallel
Strand 4	O	336	345	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	347	351	first strand
Strand 2	O	386	390	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	535	537	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	196	first strand
Strand 2	A	144	160	anti-parallel
Strand 3	A	333	337	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	202	first strand
Strand 2	A	217	225	anti-parallel
Strand 3	A	282	292	anti-parallel
Strand 4	A	306	313	anti-parallel
Strand 5	A	317	323	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	273	first strand
Strand 2	A	279	280	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	382	first strand
Strand 2	A	416	418	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	402	first strand
Strand 2	U	380	382	parallel
Strand 3	U	416	418	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	115	118	anti-parallel
Strand 3	B	108	112	anti-parallel
Strand 4	B	85	90	parallel
Strand 5	B	76	79	anti-parallel
Strand 6	B	126	130	anti-parallel
Strand 7	B	50	54	anti-parallel
Strand 8	m	204	205	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	100	102	first strand
Strand 2	U	535	537	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	181	196	first strand
Strand 2	U	144	160	anti-parallel
Strand 3	U	333	337	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	201	202	first strand
Strand 2	U	217	225	anti-parallel
Strand 3	U	282	292	anti-parallel
Strand 4	U	306	313	anti-parallel
Strand 5	U	317	323	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	272	273	first strand
Strand 2	U	279	280	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	54	first strand
Strand 2	D	126	130	anti-parallel
Strand 3	D	76	79	anti-parallel
Strand 4	D	85	90	anti-parallel
Strand 5	D	108	112	parallel
Strand 6	D	115	118	anti-parallel
Strand 7	D	60	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZKK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKK