Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZKM entry

There are 6 chains in PDB entry 8ZKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	PRO 19
B	MET 1	GLY 202
C	MET 1	GLY 202
E	MET 1	ALA 521
K	MET 1	ALA 581
L	MET 1	ALA 581

There are 67 helices in PDB entry 8ZKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	14	Right-handed alpha
Helix 2	AA2	B	20	38	Right-handed alpha
Helix 3	AA3	B	42	46	Right-handed 310
Helix 4	AA4	B	92	97	Right-handed alpha
Helix 5	AA5	B	136	139	Right-handed 310
Helix 6	AA6	B	144	149	Right-handed alpha
Helix 7	AA7	B	150	166	Right-handed alpha
Helix 8	AA8	B	167	169	Right-handed 310
Helix 9	AA9	B	170	194	Right-handed alpha
Helix 10	AB1	C	4	15	Right-handed alpha
Helix 11	AB2	C	20	38	Right-handed alpha
Helix 12	AB3	C	92	97	Right-handed alpha
Helix 13	AB4	C	98	100	Right-handed 310
Helix 14	AB5	C	144	149	Right-handed alpha
Helix 15	AB6	C	150	166	Right-handed alpha
Helix 16	AB7	C	167	169	Right-handed 310
Helix 17	AB8	C	170	194	Right-handed alpha
Helix 18	AB9	E	18	22	Right-handed 310
Helix 19	AC1	E	283	290	Right-handed alpha
Helix 20	AC2	E	377	381	Right-handed 310
Helix 21	AC3	K	11	34	Right-handed alpha
Helix 22	AC4	K	34	46	Right-handed alpha
Helix 23	AC5	K	54	64	Right-handed alpha
Helix 24	AC6	K	75	93	Right-handed alpha
Helix 25	AC7	K	106	126	Right-handed alpha
Helix 26	AC8	K	127	143	Right-handed alpha
Helix 27	AC9	K	195	199	Right-handed 310
Helix 28	AD1	K	210	218	Right-handed alpha
Helix 29	AD2	K	224	229	Right-handed alpha
Helix 30	AD3	K	245	249	Right-handed 310
Helix 31	AD4	K	277	282	Right-handed alpha
Helix 32	AD5	K	333	360	Right-handed alpha
Helix 33	AD6	K	398	401	Right-handed 310
Helix 34	AD7	K	402	419	Right-handed alpha
Helix 35	AD8	K	448	461	Right-handed alpha
Helix 36	AD9	K	461	476	Right-handed alpha
Helix 37	AE1	K	478	483	Right-handed alpha
Helix 38	AE2	K	492	496	Right-handed 310
Helix 39	AE3	K	499	506	Right-handed alpha
Helix 40	AE4	K	519	536	Right-handed alpha
Helix 41	AE5	K	537	544	Right-handed alpha
Helix 42	AE6	K	545	557	Right-handed alpha
Helix 43	AE7	K	562	566	Right-handed 310
Helix 44	AE8	K	573	579	Right-handed alpha
Helix 45	AE9	L	11	47	Right-handed alpha
Helix 46	AF1	L	52	65	Right-handed alpha
Helix 47	AF2	L	75	92	Right-handed alpha
Helix 48	AF3	L	106	126	Right-handed alpha
Helix 49	AF4	L	127	143	Right-handed alpha
Helix 50	AF5	L	192	199	Right-handed 310
Helix 51	AF6	L	210	220	Right-handed alpha
Helix 52	AF7	L	224	229	Right-handed alpha
Helix 53	AF8	L	277	282	Right-handed alpha
Helix 54	AF9	L	333	360	Right-handed alpha
Helix 55	AG1	L	372	378	Right-handed alpha
Helix 56	AG2	L	398	401	Right-handed 310
Helix 57	AG3	L	402	419	Right-handed alpha
Helix 58	AG4	L	422	426	Right-handed 310
Helix 59	AG5	L	450	476	Right-handed alpha
Helix 60	AG6	L	478	483	Right-handed alpha
Helix 61	AG7	L	492	497	Right-handed alpha
Helix 62	AG8	L	499	506	Right-handed alpha
Helix 63	AG9	L	519	536	Right-handed alpha
Helix 64	AH1	L	537	544	Right-handed alpha
Helix 65	AH2	L	546	557	Right-handed alpha
Helix 66	AH3	L	561	566	Right-handed alpha
Helix 67	AH4	L	573	578	Right-handed alpha

There are 34 sheets in PDB entry 8ZKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	B	50	54	anti-parallel
Strand 3	B	126	130	anti-parallel
Strand 4	B	77	79	anti-parallel
Strand 5	B	85	87	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	C	50	54	anti-parallel
Strand 3	C	126	130	anti-parallel
Strand 4	C	77	79	anti-parallel
Strand 5	C	85	87	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	62	first strand
Strand 2	B	115	117	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	132	134	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	90	first strand
Strand 2	B	108	109	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	115	118	anti-parallel
Strand 3	C	108	110	anti-parallel
Strand 4	C	89	90	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	132	134	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	506	515	anti-parallel
Strand 3	E	439	448	anti-parallel
Strand 4	E	483	485	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	6	first strand
Strand 2	E	506	515	anti-parallel
Strand 3	E	439	448	anti-parallel
Strand 4	E	489	490	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	29	31	first strand
Strand 2	E	413	417	anti-parallel
Strand 3	E	492	499	anti-parallel
Strand 4	E	454	461	anti-parallel
Strand 5	E	469	476	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	33	35	first strand
Strand 2	E	40	42	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	48	first strand
Strand 2	E	398	400	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	63	first strand
Strand 2	E	71	72	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	76	first strand
Strand 2	E	79	80	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	E	87	88	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	110	first strand
Strand 2	E	113	118	anti-parallel
Strand 3	E	124	125	anti-parallel
Strand 4	E	133	134	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	153	154	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	156	157	first strand
Strand 2	E	170	171	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	219	first strand
Strand 2	E	223	226	anti-parallel
Strand 3	E	238	239	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	262	first strand
Strand 2	E	267	270	anti-parallel
Strand 3	E	275	277	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	304	first strand
Strand 2	E	309	313	anti-parallel
Strand 3	E	326	331	anti-parallel
Strand 4	E	336	341	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	345	350	first strand
Strand 2	E	387	391	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	423	425	first strand
Strand 2	E	431	433	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	100	102	first strand
Strand 2	K	510	512	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	173	179	first strand
Strand 2	K	144	153	anti-parallel
Strand 3	K	317	321	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	156	159	first strand
Strand 2	K	166	169	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	201	209	first strand
Strand 2	K	266	276	anti-parallel
Strand 3	K	290	297	anti-parallel
Strand 4	K	301	307	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	364	365	first strand
Strand 2	K	392	393	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	384	386	first strand
Strand 2	L	364	366	parallel
Strand 3	L	392	393	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	100	102	first strand
Strand 2	L	510	512	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	173	179	first strand
Strand 2	L	144	153	anti-parallel
Strand 3	L	317	321	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	156	159	first strand
Strand 2	L	166	169	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	185	186	first strand
Strand 2	L	202	209	anti-parallel
Strand 3	L	266	276	anti-parallel
Strand 4	L	290	297	anti-parallel
Strand 5	L	301	307	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	256	258	first strand
Strand 2	L	262	264	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKM