Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKP entry

There are 6 chains in PDB entry 8ZKP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19ALA 956
F
 MET 1SER 34
H
 MET 1GLU 83
B
 ALA 19ALA 956
C
 MET 1SER 34
D
 MET 1ALA 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are117 helices in PDB entry 8ZKP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
31 49Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
69 82Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
135 140Right-handed 310
Helix 7
AA7
A
159 176Right-handed alpha
Helix 8
AA8
A
190 223Right-handed alpha
Helix 9
AA9
A
225 253Right-handed alpha
Helix 10
AB1
A
261 291Right-handed alpha
Helix 11
AB2
A
294 321Right-handed alpha
Helix 12
AB3
A
322 327Right-handed 310
Helix 13
AB4
A
329 334Right-handed alpha
Helix 14
AB5
A
335 362Right-handed alpha
Helix 15
AB6
A
373 389Right-handed alpha
Helix 16
AB7
A
389 406Right-handed alpha
Helix 17
AB8
A
407 411Right-handed 310
Helix 18
AB9
A
416 421Right-handed 310
Helix 19
AC1
A
425 436Right-handed alpha
Helix 20
AC2
A
458 474Right-handed alpha
Helix 21
AC3
A
496 501Right-handed alpha
Helix 22
AC4
A
670 682Right-handed alpha
Helix 23
AC5
A
692 696Right-handed 310
Helix 24
AC6
A
698 709Right-handed alpha
Helix 25
AC7
A
728 746Right-handed alpha
Helix 26
AC8
A
760 795Right-handed alpha
Helix 27
AC9
A
797 825Right-handed alpha
Helix 28
AD1
A
834 862Right-handed alpha
Helix 29
AD2
A
865 893Right-handed alpha
Helix 30
AD3
A
894 898Right-handed 310
Helix 31
AD4
A
900 920Right-handed alpha
Helix 32
AD5
A
920 933Right-handed alpha
Helix 33
AD6
A
935 939Right-handed 310
Helix 34
AD7
F
2 6Right-handed alpha
Helix 35
AD8
F
8 29Right-handed alpha
Helix 36
AD9
H
4 20Right-handed alpha
Helix 37
AE1
H
40 56Right-handed alpha
Helix 38
AE2
H
60 65Right-handed alpha
Helix 39
AE3
H
69 82Right-handed alpha
Helix 40
AE4
B
22 31Right-handed alpha
Helix 41
AE5
B
31 49Right-handed alpha
Helix 42
AE6
B
52 60Right-handed alpha
Helix 43
AE7
B
69 82Right-handed alpha
Helix 44
AE8
B
102 119Right-handed alpha
Helix 45
AE9
B
135 140Right-handed 310
Helix 46
AF1
B
159 176Right-handed alpha
Helix 47
AF2
B
190 223Right-handed alpha
Helix 48
AF3
B
225 253Right-handed alpha
Helix 49
AF4
B
261 291Right-handed alpha
Helix 50
AF5
B
294 321Right-handed alpha
Helix 51
AF6
B
322 327Right-handed 310
Helix 52
AF7
B
329 334Right-handed alpha
Helix 53
AF8
B
335 362Right-handed alpha
Helix 54
AF9
B
373 389Right-handed alpha
Helix 55
AG1
B
389 406Right-handed alpha
Helix 56
AG2
B
407 411Right-handed 310
Helix 57
AG3
B
416 421Right-handed 310
Helix 58
AG4
B
425 436Right-handed alpha
Helix 59
AG5
B
458 474Right-handed alpha
Helix 60
AG6
B
496 501Right-handed alpha
Helix 61
AG7
B
670 682Right-handed alpha
Helix 62
AG8
B
692 696Right-handed 310
Helix 63
AG9
B
698 709Right-handed alpha
Helix 64
AH1
B
728 746Right-handed alpha
Helix 65
AH2
B
760 795Right-handed alpha
Helix 66
AH3
B
797 825Right-handed alpha
Helix 67
AH4
B
834 862Right-handed alpha
Helix 68
AH5
B
865 893Right-handed alpha
Helix 69
AH6
B
894 898Right-handed 310
Helix 70
AH7
B
900 920Right-handed alpha
Helix 71
AH8
B
920 933Right-handed alpha
Helix 72
AH9
B
935 939Right-handed 310
Helix 73
AI1
C
2 6Right-handed alpha
Helix 74
AI2
C
8 29Right-handed alpha
Helix 75
AI3
D
4 20Right-handed alpha
Helix 76
AI4
D
40 56Right-handed alpha
Helix 77
AI5
D
60 65Right-handed alpha
Helix 78
AI6
D
69 82Right-handed alpha
Helix 79
AI7
E
22 31Right-handed alpha
Helix 80
AI8
E
31 49Right-handed alpha
Helix 81
AI9
E
52 60Right-handed alpha
Helix 82
AJ1
E
69 82Right-handed alpha
Helix 83
AJ2
E
102 119Right-handed alpha
Helix 84
AJ3
E
135 140Right-handed 310
Helix 85
AJ4
E
159 176Right-handed alpha
Helix 86
AJ5
E
190 223Right-handed alpha
Helix 87
AJ6
E
225 253Right-handed alpha
Helix 88
AJ7
E
261 291Right-handed alpha
Helix 89
AJ8
E
294 321Right-handed alpha
Helix 90
AJ9
E
322 327Right-handed 310
Helix 91
AK1
E
329 334Right-handed alpha
Helix 92
AK2
E
335 362Right-handed alpha
Helix 93
AK3
E
373 389Right-handed alpha
Helix 94
AK4
E
389 406Right-handed alpha
Helix 95
AK5
E
407 411Right-handed 310
Helix 96
AK6
E
416 421Right-handed 310
Helix 97
AK7
E
425 436Right-handed alpha
Helix 98
AK8
E
458 474Right-handed alpha
Helix 99
AK9
E
496 501Right-handed alpha
Helix 100
AL1
E
670 682Right-handed alpha
Helix 101
AL2
E
692 696Right-handed 310
Helix 102
AL3
E
698 709Right-handed alpha
Helix 103
AL4
E
728 746Right-handed alpha
Helix 104
AL5
E
760 795Right-handed alpha
Helix 105
AL6
E
797 825Right-handed alpha
Helix 106
AL7
E
834 862Right-handed alpha
Helix 107
AL8
E
865 893Right-handed alpha
Helix 108
AL9
E
894 898Right-handed 310
Helix 109
AM1
E
900 920Right-handed alpha
Helix 110
AM2
E
920 933Right-handed alpha
Helix 111
AM3
E
935 939Right-handed 310
Helix 112
AM4
G
2 6Right-handed alpha
Helix 113
AM5
G
8 29Right-handed alpha
Helix 114
AM6
I
4 20Right-handed alpha
Helix 115
AM7
I
40 56Right-handed alpha
Helix 116
AM8
I
60 65Right-handed alpha
Helix 117
AM9
I
69 82Right-handed alpha
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There are 9 sheets in PDB entry 8ZKP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
182 187anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
831 832parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 482first strand
Strand 2
A
715 722anti-parallel
Strand 3
A
446 451anti-parallel
Strand 4
A
755 759anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
90 97anti-parallel
Strand 4
B
182 187anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
831 832parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 482first strand
Strand 2
B
715 722anti-parallel
Strand 3
B
446 451anti-parallel
Strand 4
B
755 759anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 127first strand
Strand 2
E
146 153anti-parallel
Strand 3
E
90 97anti-parallel
Strand 4
E
182 187anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
413 414first strand
Strand 2
E
831 832parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
478 482first strand
Strand 2
E
715 722anti-parallel
Strand 3
E
446 451anti-parallel
Strand 4
E
755 759anti-parallel
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