Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKQ entry

There are 6 chains in PDB entry 8ZKQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 19ALA 956
F
 MET 1SER 34
H
 MET 1GLU 83
B
 ALA 19ALA 956
C
 MET 1SER 34
D
 MET 1ALA 3
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 8ZKQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
31 49Right-handed alpha
Helix 3
AA3
A
52 60Right-handed alpha
Helix 4
AA4
A
69 82Right-handed alpha
Helix 5
AA5
A
102 119Right-handed alpha
Helix 6
AA6
A
135 140Right-handed 310
Helix 7
AA7
A
159 175Right-handed alpha
Helix 8
AA8
A
188 223Right-handed alpha
Helix 9
AA9
A
226 253Right-handed alpha
Helix 10
AB1
A
261 291Right-handed alpha
Helix 11
AB2
A
294 323Right-handed alpha
Helix 12
AB3
A
324 327Right-handed 310
Helix 13
AB4
A
329 334Right-handed alpha
Helix 14
AB5
A
335 362Right-handed alpha
Helix 15
AB6
A
373 389Right-handed alpha
Helix 16
AB7
A
389 406Right-handed alpha
Helix 17
AB8
A
407 411Right-handed 310
Helix 18
AB9
A
416 420Right-handed 310
Helix 19
AC1
A
425 436Right-handed alpha
Helix 20
AC2
A
458 474Right-handed alpha
Helix 21
AC3
A
497 502Right-handed alpha
Helix 22
AC4
A
670 680Right-handed alpha
Helix 23
AC5
A
698 709Right-handed alpha
Helix 24
AC6
A
729 746Right-handed alpha
Helix 25
AC7
A
760 795Right-handed alpha
Helix 26
AC8
A
797 825Right-handed alpha
Helix 27
AC9
A
834 862Right-handed alpha
Helix 28
AD1
A
865 893Right-handed alpha
Helix 29
AD2
A
894 898Right-handed 310
Helix 30
AD3
A
900 920Right-handed alpha
Helix 31
AD4
A
920 933Right-handed alpha
Helix 32
AD5
A
934 939Right-handed 310
Helix 33
AD6
F
8 29Right-handed alpha
Helix 34
AD7
H
4 20Right-handed alpha
Helix 35
AD8
H
40 56Right-handed alpha
Helix 36
AD9
H
60 66Right-handed alpha
Helix 37
AE1
H
69 83Right-handed alpha
Helix 38
AE2
B
22 31Right-handed alpha
Helix 39
AE3
B
31 49Right-handed alpha
Helix 40
AE4
B
52 60Right-handed alpha
Helix 41
AE5
B
69 82Right-handed alpha
Helix 42
AE6
B
102 119Right-handed alpha
Helix 43
AE7
B
135 140Right-handed 310
Helix 44
AE8
B
159 176Right-handed alpha
Helix 45
AE9
B
190 223Right-handed alpha
Helix 46
AF1
B
225 253Right-handed alpha
Helix 47
AF2
B
261 291Right-handed alpha
Helix 48
AF3
B
294 323Right-handed alpha
Helix 49
AF4
B
324 327Right-handed 310
Helix 50
AF5
B
329 334Right-handed alpha
Helix 51
AF6
B
335 362Right-handed alpha
Helix 52
AF7
B
373 389Right-handed alpha
Helix 53
AF8
B
389 406Right-handed alpha
Helix 54
AF9
B
407 411Right-handed 310
Helix 55
AG1
B
425 436Right-handed alpha
Helix 56
AG2
B
458 474Right-handed alpha
Helix 57
AG3
B
496 501Right-handed alpha
Helix 58
AG4
B
670 682Right-handed alpha
Helix 59
AG5
B
692 696Right-handed 310
Helix 60
AG6
B
701 709Right-handed alpha
Helix 61
AG7
B
729 746Right-handed alpha
Helix 62
AG8
B
761 795Right-handed alpha
Helix 63
AG9
B
797 825Right-handed alpha
Helix 64
AH1
B
834 862Right-handed alpha
Helix 65
AH2
B
865 893Right-handed alpha
Helix 66
AH3
B
894 898Right-handed 310
Helix 67
AH4
B
900 920Right-handed alpha
Helix 68
AH5
B
920 933Right-handed alpha
Helix 69
AH6
B
935 939Right-handed 310
Helix 70
AH7
C
2 6Right-handed alpha
Helix 71
AH8
C
8 29Right-handed alpha
Helix 72
AH9
D
4 20Right-handed alpha
Helix 73
AI1
D
40 56Right-handed alpha
Helix 74
AI2
D
69 82Right-handed alpha
Helix 75
AI3
E
22 31Right-handed alpha
Helix 76
AI4
E
31 50Right-handed alpha
Helix 77
AI5
E
52 60Right-handed alpha
Helix 78
AI6
E
69 82Right-handed alpha
Helix 79
AI7
E
102 117Right-handed alpha
Helix 80
AI8
E
135 140Right-handed 310
Helix 81
AI9
E
159 176Right-handed alpha
Helix 82
AJ1
E
188 223Right-handed alpha
Helix 83
AJ2
E
225 253Right-handed alpha
Helix 84
AJ3
E
261 291Right-handed alpha
Helix 85
AJ4
E
294 323Right-handed alpha
Helix 86
AJ5
E
324 327Right-handed 310
Helix 87
AJ6
E
329 334Right-handed alpha
Helix 88
AJ7
E
335 362Right-handed alpha
Helix 89
AJ8
E
373 389Right-handed alpha
Helix 90
AJ9
E
389 406Right-handed alpha
Helix 91
AK1
E
407 411Right-handed 310
Helix 92
AK2
E
416 421Right-handed 310
Helix 93
AK3
E
425 436Right-handed alpha
Helix 94
AK4
E
460 474Right-handed alpha
Helix 95
AK5
E
672 683Right-handed alpha
Helix 96
AK6
E
692 696Right-handed 310
Helix 97
AK7
E
698 709Right-handed alpha
Helix 98
AK8
E
728 746Right-handed alpha
Helix 99
AK9
E
760 795Right-handed alpha
Helix 100
AL1
E
797 825Right-handed alpha
Helix 101
AL2
E
834 862Right-handed alpha
Helix 102
AL3
E
865 893Right-handed alpha
Helix 103
AL4
E
894 898Right-handed 310
Helix 104
AL5
E
900 920Right-handed alpha
Helix 105
AL6
E
920 933Right-handed alpha
Helix 106
AL7
E
935 939Right-handed 310
Helix 107
AL8
G
4 7Right-handed 310
Helix 108
AL9
G
8 29Right-handed alpha
Helix 109
AM1
I
4 20Right-handed alpha
Helix 110
AM2
I
40 56Right-handed alpha
Helix 111
AM3
I
60 65Right-handed alpha
Helix 112
AM4
I
69 83Right-handed alpha
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There are 9 sheets in PDB entry 8ZKQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
146 153anti-parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
182 187anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
413 414first strand
Strand 2
A
831 832parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
478 482first strand
Strand 2
A
715 722anti-parallel
Strand 3
A
446 451anti-parallel
Strand 4
A
755 759anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
146 153anti-parallel
Strand 3
B
90 97anti-parallel
Strand 4
B
182 184anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
413 414first strand
Strand 2
B
831 832parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 482first strand
Strand 2
B
715 722anti-parallel
Strand 3
B
446 451anti-parallel
Strand 4
B
755 759anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
123 127first strand
Strand 2
E
146 153anti-parallel
Strand 3
E
90 97anti-parallel
Strand 4
E
182 184anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
413 414first strand
Strand 2
E
831 832parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
478 482first strand
Strand 2
E
715 722anti-parallel
Strand 3
E
446 451anti-parallel
Strand 4
E
755 759anti-parallel
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