Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKR entry

There are 4 chains in PDB entry 8ZKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3061PRO 4120
B
 SER 219MET 698
C
 SER 219MET 698
D
 SER 219MET 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 92 helices in PDB entry 8ZKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3074 3102Right-handed alpha
Helix 2
AA2
A
3244 3249Right-handed alpha
Helix 3
AA3
A
3249 3256Right-handed alpha
Helix 4
AA4
A
3262 3266Right-handed 310
Helix 5
AA5
A
3278 3302Right-handed alpha
Helix 6
AA6
A
3322 3332Right-handed alpha
Helix 7
AA7
A
3334 3341Right-handed alpha
Helix 8
AA8
A
3559 3577Right-handed alpha
Helix 9
AA9
A
3581 3602Right-handed alpha
Helix 10
AB1
A
3603 3607Right-handed 310
Helix 11
AB2
A
3658 3660Right-handed 310
Helix 12
AB3
A
3661 3689Right-handed alpha
Helix 13
AB4
A
3691 3709Right-handed alpha
Helix 14
AB5
A
3710 3716Right-handed alpha
Helix 15
AB6
A
3722 3737Right-handed alpha
Helix 16
AB7
A
3828 3840Right-handed alpha
Helix 17
AB8
A
3892 3896Right-handed 310
Helix 18
AB9
A
3898 3924Right-handed alpha
Helix 19
AC1
A
3933 3967Right-handed alpha
Helix 20
AC2
A
3969 3973Right-handed 310
Helix 21
AC3
A
3977 4005Right-handed alpha
Helix 22
AC4
A
4006 4009Right-handed 310
Helix 23
AC5
A
4010 4012Right-handed 310
Helix 24
AC6
A
4013 4022Right-handed alpha
Helix 25
AC7
A
4022 4048Right-handed alpha
Helix 26
AC8
A
4056 4064Right-handed alpha
Helix 27
AC9
A
4066 4071Right-handed alpha
Helix 28
AD1
A
4078 4083Right-handed alpha
Helix 29
AD2
A
4083 4095Right-handed alpha
Helix 30
AD3
A
4097 4100Right-handed 310
Helix 31
AD4
A
4101 4114Right-handed alpha
Helix 32
AD5
B
220 242Right-handed alpha
Helix 33
AD6
B
245 259Right-handed alpha
Helix 34
AD7
B
269 273Right-handed 310
Helix 35
AD8
B
275 284Right-handed alpha
Helix 36
AD9
B
285 292Right-handed alpha
Helix 37
AE1
B
334 338Right-handed 310
Helix 38
AE2
B
349 353Right-handed 310
Helix 39
AE3
B
363 367Right-handed 310
Helix 40
AE4
B
370 375Right-handed alpha
Helix 41
AE5
B
398 412Right-handed alpha
Helix 42
AE6
B
467 496Right-handed alpha
Helix 43
AE7
B
506 530Right-handed alpha
Helix 44
AE8
B
532 541Right-handed alpha
Helix 45
AE9
B
548 572Right-handed alpha
Helix 46
AF1
B
573 576Right-handed 310
Helix 47
AF2
B
580 620Right-handed alpha
Helix 48
AF3
B
628 642Right-handed alpha
Helix 49
AF4
B
645 653Right-handed alpha
Helix 50
AF5
B
657 670Right-handed alpha
Helix 51
AF6
B
671 695Right-handed alpha
Helix 52
AF7
C
220 242Right-handed alpha
Helix 53
AF8
C
246 259Right-handed alpha
Helix 54
AF9
C
269 273Right-handed 310
Helix 55
AG1
C
275 284Right-handed alpha
Helix 56
AG2
C
285 292Right-handed alpha
Helix 57
AG3
C
334 338Right-handed 310
Helix 58
AG4
C
349 353Right-handed 310
Helix 59
AG5
C
363 367Right-handed 310
Helix 60
AG6
C
370 375Right-handed alpha
Helix 61
AG7
C
398 412Right-handed alpha
Helix 62
AG8
C
467 495Right-handed alpha
Helix 63
AG9
C
501 505Right-handed 310
Helix 64
AH1
C
506 530Right-handed alpha
Helix 65
AH2
C
532 541Right-handed alpha
Helix 66
AH3
C
548 571Right-handed alpha
Helix 67
AH4
C
572 576Right-handed 310
Helix 68
AH5
C
580 593Right-handed alpha
Helix 69
AH6
C
593 620Right-handed alpha
Helix 70
AH7
C
628 641Right-handed alpha
Helix 71
AH8
C
646 653Right-handed alpha
Helix 72
AH9
C
656 671Right-handed alpha
Helix 73
AI1
C
671 695Right-handed alpha
Helix 74
AI2
D
220 238Right-handed alpha
Helix 75
AI3
D
238 243Right-handed alpha
Helix 76
AI4
D
245 258Right-handed alpha
Helix 77
AI5
D
269 273Right-handed 310
Helix 78
AI6
D
275 284Right-handed alpha
Helix 79
AI7
D
285 292Right-handed alpha
Helix 80
AI8
D
334 338Right-handed 310
Helix 81
AI9
D
363 367Right-handed 310
Helix 82
AJ1
D
398 412Right-handed alpha
Helix 83
AJ2
D
467 496Right-handed alpha
Helix 84
AJ3
D
505 530Right-handed alpha
Helix 85
AJ4
D
549 560Right-handed alpha
Helix 86
AJ5
D
561 572Right-handed alpha
Helix 87
AJ6
D
573 578Right-handed alpha
Helix 88
AJ7
D
583 620Right-handed alpha
Helix 89
AJ8
D
628 641Right-handed alpha
Helix 90
AJ9
D
646 653Right-handed alpha
Helix 91
AK1
D
656 671Right-handed alpha
Helix 92
AK2
D
673 694Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8ZKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3138 3141first strand
Strand 2
A
3182 3186anti-parallel
Strand 3
A
3224 3227anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3749 3751first strand
Strand 2
A
3819 3821anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3857 3858first strand
Strand 2
A
3863 3870anti-parallel
Strand 3
A
3882 3888anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
419 428anti-parallel
Strand 4
B
436 444anti-parallel
Strand 5
B
452 460anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 394first strand
Strand 2
C
320 325anti-parallel
Strand 3
C
419 428anti-parallel
Strand 4
C
437 444anti-parallel
Strand 5
C
452 458anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
391 394first strand
Strand 2
D
320 325anti-parallel
Strand 3
D
419 429anti-parallel
Strand 4
D
436 444anti-parallel
Strand 5
D
452 459anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il