Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKS entry

There are 4 chains in PDB entry 8ZKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3063PRO 4120
B
 SER 219MET 698
C
 SER 219MET 698
D
 LEU 217GLU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 8ZKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3074 3101Right-handed alpha
Helix 2
AA2
A
3251 3256Right-handed alpha
Helix 3
AA3
A
3261 3266Right-handed 310
Helix 4
AA4
A
3281 3301Right-handed alpha
Helix 5
AA5
A
3320 3330Right-handed alpha
Helix 6
AA6
A
3333 3345Right-handed alpha
Helix 7
AA7
A
3557 3578Right-handed alpha
Helix 8
AA8
A
3581 3617Right-handed alpha
Helix 9
AA9
A
3655 3662Right-handed alpha
Helix 10
AB1
A
3662 3689Right-handed alpha
Helix 11
AB2
A
3691 3709Right-handed alpha
Helix 12
AB3
A
3710 3716Right-handed alpha
Helix 13
AB4
A
3722 3730Right-handed alpha
Helix 14
AB5
A
3731 3736Right-handed alpha
Helix 15
AB6
A
3829 3838Right-handed alpha
Helix 16
AB7
A
3892 3896Right-handed 310
Helix 17
AB8
A
3898 3926Right-handed alpha
Helix 18
AB9
A
3933 3968Right-handed alpha
Helix 19
AC1
A
3977 4006Right-handed alpha
Helix 20
AC2
A
4007 4009Right-handed 310
Helix 21
AC3
A
4013 4041Right-handed alpha
Helix 22
AC4
A
4101 4119Right-handed alpha
Helix 23
AC5
B
221 242Right-handed alpha
Helix 24
AC6
B
246 259Right-handed alpha
Helix 25
AC7
B
269 273Right-handed 310
Helix 26
AC8
B
275 284Right-handed alpha
Helix 27
AC9
B
285 292Right-handed alpha
Helix 28
AD1
B
334 338Right-handed 310
Helix 29
AD2
B
349 353Right-handed 310
Helix 30
AD3
B
370 375Right-handed alpha
Helix 31
AD4
B
398 412Right-handed alpha
Helix 32
AD5
B
467 498Right-handed alpha
Helix 33
AD6
B
508 531Right-handed alpha
Helix 34
AD7
B
532 541Right-handed alpha
Helix 35
AD8
B
548 573Right-handed alpha
Helix 36
AD9
B
574 577Right-handed 310
Helix 37
AE1
B
580 620Right-handed alpha
Helix 38
AE2
B
628 641Right-handed alpha
Helix 39
AE3
B
647 653Right-handed alpha
Helix 40
AE4
B
656 697Right-handed alpha
Helix 41
AE5
C
220 243Right-handed alpha
Helix 42
AE6
C
245 259Right-handed alpha
Helix 43
AE7
C
269 273Right-handed 310
Helix 44
AE8
C
275 285Right-handed alpha
Helix 45
AE9
C
349 353Right-handed 310
Helix 46
AF1
C
363 367Right-handed 310
Helix 47
AF2
C
370 375Right-handed alpha
Helix 48
AF3
C
398 412Right-handed alpha
Helix 49
AF4
C
468 498Right-handed alpha
Helix 50
AF5
C
507 537Right-handed alpha
Helix 51
AF6
C
548 572Right-handed alpha
Helix 52
AF7
C
573 576Right-handed 310
Helix 53
AF8
C
580 593Right-handed alpha
Helix 54
AF9
C
594 620Right-handed alpha
Helix 55
AG1
C
628 641Right-handed alpha
Helix 56
AG2
C
646 653Right-handed alpha
Helix 57
AG3
C
657 695Right-handed alpha
Helix 58
AG4
D
218 242Right-handed alpha
Helix 59
AG5
D
246 256Right-handed alpha
Helix 60
AG6
D
275 291Right-handed alpha
Helix 61
AG7
D
363 367Right-handed 310
Helix 62
AG8
D
370 374Right-handed 310
Helix 63
AG9
D
474 492Right-handed alpha
Helix 64
AH1
D
510 516Right-handed alpha
Helix 65
AH2
D
518 530Right-handed alpha
Helix 66
AH3
D
550 577Right-handed alpha
Helix 67
AH4
D
580 592Right-handed alpha
Helix 68
AH5
D
593 620Right-handed alpha
Helix 69
AH6
D
623 627Right-handed 310
Helix 70
AH7
D
628 641Right-handed alpha
Helix 71
AH8
D
646 653Right-handed alpha
Helix 72
AH9
D
657 693Right-handed alpha
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There are 5 sheets in PDB entry 8ZKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3138 3140first strand
Strand 2
A
3184 3186anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3748 3749first strand
Strand 2
A
3852 3858anti-parallel
Strand 3
A
3863 3872anti-parallel
Strand 4
A
3880 3888anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
419 428anti-parallel
Strand 4
B
437 444anti-parallel
Strand 5
B
452 458anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 394first strand
Strand 2
C
320 325anti-parallel
Strand 3
C
419 428anti-parallel
Strand 4
C
436 444anti-parallel
Strand 5
C
452 460anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
322 324first strand
Strand 2
D
421 427anti-parallel
Strand 3
D
438 444anti-parallel
Strand 4
D
452 455anti-parallel
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