Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKT entry

There are 4 chains in PDB entry 8ZKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3061PRO 4120
B
 LYS 215GLU 699
C
 LYS 215MET 698
D
 LEU 217MET 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 85 helices in PDB entry 8ZKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3074 3082Right-handed alpha
Helix 2
AA2
A
3082 3109Right-handed alpha
Helix 3
AA3
A
3246 3254Right-handed alpha
Helix 4
AA4
A
3262 3266Right-handed 310
Helix 5
AA5
A
3278 3299Right-handed alpha
Helix 6
AA6
A
3322 3345Right-handed alpha
Helix 7
AA7
A
3557 3577Right-handed alpha
Helix 8
AA8
A
3578 3580Right-handed 310
Helix 9
AA9
A
3581 3599Right-handed alpha
Helix 10
AB1
A
3603 3615Right-handed alpha
Helix 11
AB2
A
3656 3689Right-handed alpha
Helix 12
AB3
A
3691 3694Right-handed 310
Helix 13
AB4
A
3695 3709Right-handed alpha
Helix 14
AB5
A
3713 3717Right-handed 310
Helix 15
AB6
A
3722 3730Right-handed alpha
Helix 16
AB7
A
3730 3737Right-handed alpha
Helix 17
AB8
A
3829 3840Right-handed alpha
Helix 18
AB9
A
3892 3896Right-handed 310
Helix 19
AC1
A
3898 3926Right-handed alpha
Helix 20
AC2
A
3932 3968Right-handed alpha
Helix 21
AC3
A
3977 4004Right-handed alpha
Helix 22
AC4
A
4005 4009Right-handed 310
Helix 23
AC5
A
4013 4022Right-handed alpha
Helix 24
AC6
A
4022 4045Right-handed alpha
Helix 25
AC7
A
4104 4119Right-handed alpha
Helix 26
AC8
B
221 240Right-handed alpha
Helix 27
AC9
B
244 259Right-handed alpha
Helix 28
AD1
B
269 273Right-handed 310
Helix 29
AD2
B
275 284Right-handed alpha
Helix 30
AD3
B
285 290Right-handed alpha
Helix 31
AD4
B
335 340Right-handed 310
Helix 32
AD5
B
349 353Right-handed 310
Helix 33
AD6
B
370 375Right-handed alpha
Helix 34
AD7
B
398 412Right-handed alpha
Helix 35
AD8
B
467 497Right-handed alpha
Helix 36
AD9
B
508 530Right-handed alpha
Helix 37
AE1
B
532 541Right-handed alpha
Helix 38
AE2
B
548 572Right-handed alpha
Helix 39
AE3
B
573 576Right-handed 310
Helix 40
AE4
B
580 593Right-handed alpha
Helix 41
AE5
B
593 620Right-handed alpha
Helix 42
AE6
B
628 641Right-handed alpha
Helix 43
AE7
B
647 653Right-handed alpha
Helix 44
AE8
B
655 670Right-handed alpha
Helix 45
AE9
B
674 699Right-handed alpha
Helix 46
AF1
C
216 241Right-handed alpha
Helix 47
AF2
C
244 259Right-handed alpha
Helix 48
AF3
C
269 273Right-handed 310
Helix 49
AF4
C
275 284Right-handed alpha
Helix 50
AF5
C
285 293Right-handed alpha
Helix 51
AF6
C
334 338Right-handed 310
Helix 52
AF7
C
349 353Right-handed 310
Helix 53
AF8
C
370 375Right-handed alpha
Helix 54
AF9
C
398 412Right-handed alpha
Helix 55
AG1
C
467 496Right-handed alpha
Helix 56
AG2
C
510 531Right-handed alpha
Helix 57
AG3
C
532 540Right-handed alpha
Helix 58
AG4
C
548 572Right-handed alpha
Helix 59
AG5
C
573 578Right-handed alpha
Helix 60
AG6
C
583 593Right-handed alpha
Helix 61
AG7
C
593 620Right-handed alpha
Helix 62
AG8
C
628 642Right-handed alpha
Helix 63
AG9
C
646 653Right-handed alpha
Helix 64
AH1
C
657 670Right-handed alpha
Helix 65
AH2
C
673 697Right-handed alpha
Helix 66
AH3
D
218 240Right-handed alpha
Helix 67
AH4
D
241 242Right-handed 310
Helix 68
AH5
D
243 246Right-handed 310
Helix 69
AH6
D
247 257Right-handed alpha
Helix 70
AH7
D
269 273Right-handed 310
Helix 71
AH8
D
275 285Right-handed alpha
Helix 72
AH9
D
286 291Right-handed alpha
Helix 73
AI1
D
363 367Right-handed 310
Helix 74
AI2
D
371 375Right-handed 310
Helix 75
AI3
D
402 412Right-handed alpha
Helix 76
AI4
D
469 498Right-handed alpha
Helix 77
AI5
D
507 535Right-handed alpha
Helix 78
AI6
D
548 572Right-handed alpha
Helix 79
AI7
D
573 577Right-handed 310
Helix 80
AI8
D
583 593Right-handed alpha
Helix 81
AI9
D
593 619Right-handed alpha
Helix 82
AJ1
D
628 640Right-handed alpha
Helix 83
AJ2
D
648 653Right-handed alpha
Helix 84
AJ3
D
657 670Right-handed alpha
Helix 85
AJ4
D
673 696Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8ZKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3138 3141first strand
Strand 2
A
3183 3186anti-parallel
Strand 3
A
3223 3226anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3852 3858first strand
Strand 2
A
3863 3872anti-parallel
Strand 3
A
3880 3884anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3852 3858first strand
Strand 2
A
3863 3872anti-parallel
Strand 3
A
3887 3888anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
419 428anti-parallel
Strand 4
B
437 444anti-parallel
Strand 5
B
452 458anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 394first strand
Strand 2
C
320 325anti-parallel
Strand 3
C
419 428anti-parallel
Strand 4
C
437 444anti-parallel
Strand 5
C
452 458anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
391 394first strand
Strand 2
D
320 325anti-parallel
Strand 3
D
419 427anti-parallel
Strand 4
D
437 444anti-parallel
Strand 5
D
452 459anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il