Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZKU entry

There are 4 chains in PDB entry 8ZKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3063PRO 4120
B
 LYS 215MET 698
C
 LYS 215MET 698
D
 LEU 217MET 698
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8ZKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3074 3106Right-handed alpha
Helix 2
AA2
A
3244 3257Right-handed alpha
Helix 3
AA3
A
3262 3266Right-handed 310
Helix 4
AA4
A
3279 3299Right-handed alpha
Helix 5
AA5
A
3322 3345Right-handed alpha
Helix 6
AA6
A
3553 3577Right-handed alpha
Helix 7
AA7
A
3578 3580Right-handed 310
Helix 8
AA8
A
3581 3599Right-handed alpha
Helix 9
AA9
A
3603 3618Right-handed alpha
Helix 10
AB1
A
3656 3690Right-handed alpha
Helix 11
AB2
A
3693 3709Right-handed alpha
Helix 12
AB3
A
3710 3716Right-handed alpha
Helix 13
AB4
A
3719 3721Right-handed 310
Helix 14
AB5
A
3722 3730Right-handed alpha
Helix 15
AB6
A
3730 3736Right-handed alpha
Helix 16
AB7
A
3826 3839Right-handed alpha
Helix 17
AB8
A
3892 3896Right-handed 310
Helix 18
AB9
A
3898 3903Right-handed alpha
Helix 19
AC1
A
3906 3926Right-handed alpha
Helix 20
AC2
A
3932 3935Right-handed 310
Helix 21
AC3
A
3936 3970Right-handed alpha
Helix 22
AC4
A
3971 3973Right-handed 310
Helix 23
AC5
A
3977 4005Right-handed alpha
Helix 24
AC6
A
4013 4037Right-handed alpha
Helix 25
AC7
A
4100 4119Right-handed alpha
Helix 26
AC8
B
216 221Right-handed alpha
Helix 27
AC9
B
221 242Right-handed alpha
Helix 28
AD1
B
246 258Right-handed alpha
Helix 29
AD2
B
269 273Right-handed 310
Helix 30
AD3
B
275 284Right-handed alpha
Helix 31
AD4
B
287 292Right-handed alpha
Helix 32
AD5
B
334 338Right-handed 310
Helix 33
AD6
B
349 353Right-handed 310
Helix 34
AD7
B
398 412Right-handed alpha
Helix 35
AD8
B
467 493Right-handed alpha
Helix 36
AD9
B
510 531Right-handed alpha
Helix 37
AE1
B
532 541Right-handed alpha
Helix 38
AE2
B
550 572Right-handed alpha
Helix 39
AE3
B
573 577Right-handed 310
Helix 40
AE4
B
580 593Right-handed alpha
Helix 41
AE5
B
593 620Right-handed alpha
Helix 42
AE6
B
628 642Right-handed alpha
Helix 43
AE7
B
648 653Right-handed alpha
Helix 44
AE8
B
655 670Right-handed alpha
Helix 45
AE9
B
673 696Right-handed alpha
Helix 46
AF1
C
216 241Right-handed alpha
Helix 47
AF2
C
244 258Right-handed alpha
Helix 48
AF3
C
269 273Right-handed 310
Helix 49
AF4
C
275 283Right-handed alpha
Helix 50
AF5
C
285 292Right-handed alpha
Helix 51
AF6
C
349 353Right-handed 310
Helix 52
AF7
C
371 375Right-handed 310
Helix 53
AF8
C
398 412Right-handed alpha
Helix 54
AF9
C
468 498Right-handed alpha
Helix 55
AG1
C
509 531Right-handed alpha
Helix 56
AG2
C
532 537Right-handed alpha
Helix 57
AG3
C
550 572Right-handed alpha
Helix 58
AG4
C
573 579Right-handed 310
Helix 59
AG5
C
580 620Right-handed alpha
Helix 60
AG6
C
628 642Right-handed alpha
Helix 61
AG7
C
646 653Right-handed alpha
Helix 62
AG8
C
657 670Right-handed alpha
Helix 63
AG9
C
672 696Right-handed alpha
Helix 64
AH1
D
218 223Right-handed alpha
Helix 65
AH2
D
223 242Right-handed alpha
Helix 66
AH3
D
247 257Right-handed alpha
Helix 67
AH4
D
275 291Right-handed alpha
Helix 68
AH5
D
363 367Right-handed 310
Helix 69
AH6
D
401 412Right-handed alpha
Helix 70
AH7
D
470 475Right-handed alpha
Helix 71
AH8
D
476 498Right-handed alpha
Helix 72
AH9
D
510 533Right-handed alpha
Helix 73
AI1
D
548 579Right-handed alpha
Helix 74
AI2
D
588 592Right-handed 310
Helix 75
AI3
D
593 619Right-handed alpha
Helix 76
AI4
D
628 641Right-handed alpha
Helix 77
AI5
D
646 653Right-handed alpha
Helix 78
AI6
D
656 670Right-handed alpha
Helix 79
AI7
D
672 698Right-handed alpha
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There are 6 sheets in PDB entry 8ZKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3135 3140first strand
Strand 2
A
3183 3189anti-parallel
Strand 3
A
3224 3226anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3748 3749first strand
Strand 2
A
3852 3853anti-parallel
Strand 3
A
3863 3872anti-parallel
Strand 4
A
3856 3858anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3748 3749first strand
Strand 2
A
3852 3853anti-parallel
Strand 3
A
3863 3872anti-parallel
Strand 4
A
3880 3888anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 394first strand
Strand 2
B
320 325anti-parallel
Strand 3
B
419 428anti-parallel
Strand 4
B
437 444anti-parallel
Strand 5
B
452 458anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
391 394first strand
Strand 2
C
320 325anti-parallel
Strand 3
C
419 428anti-parallel
Strand 4
C
436 444anti-parallel
Strand 5
C
452 460anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
421 427first strand
Strand 2
D
437 444anti-parallel
Strand 3
D
452 459anti-parallel
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