Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8ZKV entry

There are 8 chains in PDB entry 8ZKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 10	PHE 61
A	LEU 63	LEU 334
B	ALA 10	PHE 61
B	LEU 63	LEU 336
C	ALA 10	PHE 61
C	LEU 63	GLU 337
D	SER 8	PHE 61
D	LEU 63	GLU 335

There are 61 helices in PDB entry 8ZKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA3	A	37	45	Right-handed alpha
Helix 3	AA4	A	54	56	Right-handed 310
Helix 4	AA5	A	61	72	Right-handed alpha
Helix 5	AA6	A	74	81	Right-handed alpha
Helix 6	AA7	A	88	102	Right-handed alpha
Helix 7	AA8	A	114	125	Right-handed alpha
Helix 8	AA9	A	134	150	Right-handed alpha
Helix 9	AB1	A	159	177	Right-handed alpha
Helix 10	AB2	A	190	204	Right-handed alpha
Helix 11	AB3	A	218	227	Right-handed alpha
Helix 12	AB5	A	248	259	Right-handed alpha
Helix 13	AB6	A	266	282	Right-handed alpha
Helix 14	AB7	A	286	304	Right-handed alpha
Helix 15	AB8	A	323	334	Right-handed alpha
Helix 16	AB9	B	12	22	Right-handed alpha
Helix 17	AC2	B	37	45	Right-handed alpha
Helix 18	AC3	B	54	56	Right-handed 310
Helix 19	AC4	B	61	72	Right-handed alpha
Helix 20	AC5	B	74	81	Right-handed alpha
Helix 21	AC6	B	88	102	Right-handed alpha
Helix 22	AC7	B	114	124	Right-handed alpha
Helix 23	AC8	B	134	150	Right-handed alpha
Helix 24	AC9	B	159	177	Right-handed alpha
Helix 25	AD1	B	190	204	Right-handed alpha
Helix 26	AD2	B	218	227	Right-handed alpha
Helix 27	AD4	B	248	259	Right-handed alpha
Helix 28	AD5	B	266	282	Right-handed alpha
Helix 29	AD6	B	286	304	Right-handed alpha
Helix 30	AD7	B	323	336	Right-handed alpha
Helix 31	AD8	C	12	22	Right-handed alpha
Helix 32	AE1	C	37	45	Right-handed alpha
Helix 33	AE2	C	54	56	Right-handed 310
Helix 34	AE3	C	61	72	Right-handed alpha
Helix 35	AE4	C	74	80	Right-handed alpha
Helix 36	AE5	C	88	102	Right-handed alpha
Helix 37	AE6	C	114	124	Right-handed alpha
Helix 38	AE7	C	134	150	Right-handed alpha
Helix 39	AE8	C	159	177	Right-handed alpha
Helix 40	AE9	C	190	204	Right-handed alpha
Helix 41	AF1	C	218	227	Right-handed alpha
Helix 42	AF3	C	248	259	Right-handed alpha
Helix 43	AF4	C	266	282	Right-handed alpha
Helix 44	AF5	C	286	289	Right-handed 310
Helix 45	AF6	C	290	304	Right-handed alpha
Helix 46	AF7	C	323	337	Right-handed alpha
Helix 47	AF8	D	12	22	Right-handed alpha
Helix 48	AG1	D	37	45	Right-handed alpha
Helix 49	AG2	D	54	56	Right-handed 310
Helix 50	AG3	D	61	72	Right-handed alpha
Helix 51	AG4	D	74	81	Right-handed alpha
Helix 52	AG5	D	88	102	Right-handed alpha
Helix 53	AG6	D	114	125	Right-handed alpha
Helix 54	AG7	D	134	150	Right-handed alpha
Helix 55	AG8	D	159	177	Right-handed alpha
Helix 56	AG9	D	190	204	Right-handed alpha
Helix 57	AH1	D	218	227	Right-handed alpha
Helix 58	AH3	D	248	259	Right-handed alpha
Helix 59	AH4	D	266	282	Right-handed alpha
Helix 60	AH5	D	286	303	Right-handed alpha
Helix 61	AH6	D	323	334	Right-handed alpha

There are 8 sheets in PDB entry 8ZKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	309	314	parallel
Strand 4	A	182	186	parallel
Strand 5	A	208	214	parallel
Strand 6	A	261	265	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	130	first strand
Strand 2	A	105	109	parallel
Strand 3	A	82	85	parallel
Strand 4	A	152	153	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	36	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	309	314	parallel
Strand 4	B	182	186	parallel
Strand 5	B	208	214	parallel
Strand 6	B	261	265	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	105	109	parallel
Strand 3	B	82	85	parallel
Strand 4	B	152	153	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	309	314	parallel
Strand 4	C	182	186	parallel
Strand 5	C	208	214	parallel
Strand 6	C	261	265	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	105	109	parallel
Strand 3	C	82	85	parallel
Strand 4	C	152	153	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	36	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	309	314	parallel
Strand 4	D	182	186	parallel
Strand 5	D	208	214	parallel
Strand 6	D	261	265	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	127	130	first strand
Strand 2	D	105	109	parallel
Strand 3	D	82	85	parallel
Strand 4	D	152	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8ZKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZKV