Analysis of interatomic Contacts of Structural Units in PDB entry:
8ZLA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8ZLA entry

There is 1 chain in PDB entry 8ZLA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1ILE 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 8ZLA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 34Right-handed alpha
Helix 2
AA2
A
77 82Right-handed 310
Helix 3
AA3
A
95 97Right-handed 310
Helix 4
AA4
A
98 117Right-handed alpha
Helix 5
AA5
A
135 157Right-handed alpha
Helix 6
AA6
A
170 180Right-handed alpha
Helix 7
AA7
A
181 184Right-handed 310
Helix 8
AA8
A
187 204Right-handed alpha
Helix 9
AA9
A
223 225Right-handed 310
Helix 10
AB1
A
226 240Right-handed alpha
Helix 11
AB2
A
282 284Right-handed 310
Helix 12
AB3
A
287 307Right-handed alpha
Helix 13
AB4
A
309 315Right-handed alpha
Helix 14
AB5
A
318 326Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8ZLA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
50 53anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
12 18parallel
Strand 5
A
84 92parallel
Strand 6
A
121 127parallel
Strand 7
A
162 166parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 221first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
269 280anti-parallel
Strand 4
A
255 266anti-parallel
Strand 5
A
250 252anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il